脂滴模拟的进展:极化如何影响三酰甘油在体积和界面环境中的行为。

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
R. Jay Braun,  and , Jessica M. J. Swanson*, 
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引用次数: 0

摘要

甘油三酯(TG)是脂滴(ld)中的主要中性脂质,脂滴是负责脂质储存、代谢和信号传导的细胞器。分子动力学(MD)模拟为研究热重结构提供了有价值的见解,但固定电荷力场很难捕捉到在疏水核和极性界面上的热重行为。在这里,我们利用Drude2023脂质力场开发并评估了一个极化热重模型,并根据体积密度、热重-水界面张力、核心水化和单层膨胀的实验测量对其性能进行了基准测试。德鲁德模型准确地再现了实验性质,并捕捉到了关键的单层特征,如表面取向tg (surf - tg)和化学上不同的膜包装缺陷。与c36 -标准和c36 -截止等固定电荷模型相比,德鲁德极化模型是唯一能够在极性-非极性界面(如LD单层)和更均匀的疏水环境(如LD核心)中捕捉TG双重性质的力场。C36-standard与LD单层的Drude结果一致,C36-cutoff与LD岩心水化程度降低的结果一致。即使施加较大的表面张力,c36 -截止也不会产生类似德鲁德的LD单层性质。这些结果强调了动态极化的重要性,并建立了Drude2023作为一个更可靠的框架来模拟异质系统(如ld)中的TG。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Progress in Lipid Droplet Simulations: How Polarizability Shapes Triacylglycerol Behavior in Bulk and Interfacial Environments

Progress in Lipid Droplet Simulations: How Polarizability Shapes Triacylglycerol Behavior in Bulk and Interfacial Environments

Triacylglycerols (TG) are the primary neutral lipids in lipid droplets (LDs), organelles responsible for lipid storage, metabolism, and signaling. Molecular dynamics (MD) simulations have provided valuable insight into LD structure, but fixed-charge force fields struggle to capture TG behavior across both hydrophobic cores and polar interfaces. Here, we develop and evaluate a polarizable TG model using the Drude2023 lipid force field and benchmark its performance against experimental measurements of bulk density, TG–water interfacial tension, core hydration, and monolayer expansion. The Drude model accurately reproduces the experimental properties and captures key monolayer features such as surface-oriented TGs (SURF-TGs) and chemically distinct membrane packing defects. Compared to fixed-charge models such as C36-standard and C36-cutoff, the Drude polarizable model is the only force field able to capture the dual nature of TG at polar–nonpolar interfaces like the LD monolayer and more homogeneous hydrophobic environments, like the LD core. However, C36-standard is consistent with the Drude results for the LD monolayer, while C36-cutoff is consistent with the decreased hydration in the LD core. Even with large applied surface tensions, C36-cutoff does not produce Drude-like LD monolayer properties. These results highlight the importance of dynamic polarizability and establish Drude2023 as a more reliable framework for simulating TG in heterogeneous systems like LDs.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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