{"title":"脂滴模拟的进展:极化如何影响三酰甘油在体积和界面环境中的行为。","authors":"R. Jay Braun, and , Jessica M. J. Swanson*, ","doi":"10.1021/acs.jctc.5c00882","DOIUrl":null,"url":null,"abstract":"<p >Triacylglycerols (TG) are the primary neutral lipids in lipid droplets (LDs), organelles responsible for lipid storage, metabolism, and signaling. Molecular dynamics (MD) simulations have provided valuable insight into LD structure, but fixed-charge force fields struggle to capture TG behavior across both hydrophobic cores and polar interfaces. Here, we develop and evaluate a polarizable TG model using the Drude2023 lipid force field and benchmark its performance against experimental measurements of bulk density, TG–water interfacial tension, core hydration, and monolayer expansion. The Drude model accurately reproduces the experimental properties and captures key monolayer features such as surface-oriented TGs (SURF-TGs) and chemically distinct membrane packing defects. Compared to fixed-charge models such as C36-standard and C36-cutoff, the Drude polarizable model is the only force field able to capture the dual nature of TG at polar–nonpolar interfaces like the LD monolayer and more homogeneous hydrophobic environments, like the LD core. However, C36-standard is consistent with the Drude results for the LD monolayer, while C36-cutoff is consistent with the decreased hydration in the LD core. Even with large applied surface tensions, C36-cutoff does not produce Drude-like LD monolayer properties. These results highlight the importance of dynamic polarizability and establish Drude2023 as a more reliable framework for simulating TG in heterogeneous systems like LDs.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"21 16","pages":"8235–8248"},"PeriodicalIF":5.5000,"publicationDate":"2025-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Progress in Lipid Droplet Simulations: How Polarizability Shapes Triacylglycerol Behavior in Bulk and Interfacial Environments\",\"authors\":\"R. Jay Braun, and , Jessica M. J. Swanson*, \",\"doi\":\"10.1021/acs.jctc.5c00882\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Triacylglycerols (TG) are the primary neutral lipids in lipid droplets (LDs), organelles responsible for lipid storage, metabolism, and signaling. Molecular dynamics (MD) simulations have provided valuable insight into LD structure, but fixed-charge force fields struggle to capture TG behavior across both hydrophobic cores and polar interfaces. Here, we develop and evaluate a polarizable TG model using the Drude2023 lipid force field and benchmark its performance against experimental measurements of bulk density, TG–water interfacial tension, core hydration, and monolayer expansion. The Drude model accurately reproduces the experimental properties and captures key monolayer features such as surface-oriented TGs (SURF-TGs) and chemically distinct membrane packing defects. Compared to fixed-charge models such as C36-standard and C36-cutoff, the Drude polarizable model is the only force field able to capture the dual nature of TG at polar–nonpolar interfaces like the LD monolayer and more homogeneous hydrophobic environments, like the LD core. However, C36-standard is consistent with the Drude results for the LD monolayer, while C36-cutoff is consistent with the decreased hydration in the LD core. Even with large applied surface tensions, C36-cutoff does not produce Drude-like LD monolayer properties. These results highlight the importance of dynamic polarizability and establish Drude2023 as a more reliable framework for simulating TG in heterogeneous systems like LDs.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\"21 16\",\"pages\":\"8235–8248\"},\"PeriodicalIF\":5.5000,\"publicationDate\":\"2025-08-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/acs.jctc.5c00882\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jctc.5c00882","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Progress in Lipid Droplet Simulations: How Polarizability Shapes Triacylglycerol Behavior in Bulk and Interfacial Environments
Triacylglycerols (TG) are the primary neutral lipids in lipid droplets (LDs), organelles responsible for lipid storage, metabolism, and signaling. Molecular dynamics (MD) simulations have provided valuable insight into LD structure, but fixed-charge force fields struggle to capture TG behavior across both hydrophobic cores and polar interfaces. Here, we develop and evaluate a polarizable TG model using the Drude2023 lipid force field and benchmark its performance against experimental measurements of bulk density, TG–water interfacial tension, core hydration, and monolayer expansion. The Drude model accurately reproduces the experimental properties and captures key monolayer features such as surface-oriented TGs (SURF-TGs) and chemically distinct membrane packing defects. Compared to fixed-charge models such as C36-standard and C36-cutoff, the Drude polarizable model is the only force field able to capture the dual nature of TG at polar–nonpolar interfaces like the LD monolayer and more homogeneous hydrophobic environments, like the LD core. However, C36-standard is consistent with the Drude results for the LD monolayer, while C36-cutoff is consistent with the decreased hydration in the LD core. Even with large applied surface tensions, C36-cutoff does not produce Drude-like LD monolayer properties. These results highlight the importance of dynamic polarizability and establish Drude2023 as a more reliable framework for simulating TG in heterogeneous systems like LDs.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.