实用机器学习策略4:使用神经网络复制从ωB97X-D/6-31G*密度函数计算中获得的质子和13C NMR化学位移。

IF 3.6 2区 化学 Q1 CHEMISTRY, ORGANIC
Thomas Hehre, Philip E. Klunzinger, Bernard J. Deppmeier, William Sean Ohlinger and Warren J Hehre*, 
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引用次数: 0

摘要

描述的神经网络可以精确地再现从ωB97X-D/6-31G*//ωB97X-D/6-31G*密度函数模型GIAO计算中得到的质子和13C化学位移。它们支持不带电的闭壳分子,包括氢、碳、氮、氧、氟、硫、氯和溴。开发涉及培训约270万平衡几何和化学位移计算的各种有机分子(包括合成药物和天然产物)的集合。根据ωB97X-D/6-31G*//ωB97X-D/6-31G*计算,601种海洋天然产物的神经网络化学位移的RMS误差分别为0.05 ppm(质子)和0.76 ppm (13C)。当利用先前描述的“估计ωB97X-D/6-31G*”神经网络模型(训练以重现ωB97X-D/6-31G*几何)的平衡几何时,RMS误差为0.09 ppm(质子)和1.02 ppm (13C)移位。提供了246种天然产物的实验13C化学位移的第二次评估。使用神经网络模型提供几何和化学位移:45%的13C位移在1ppm范围内重现实验值,73%在2ppm范围内,86%在3ppm范围内。利用平衡几何和化学位移的神经网络模型减少了精确质子和13C化学位移所需的计算时间,从几十到几百分钟到每个分子只有几秒钟。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Practical Machine Learning Strategies 4: Using Neural Networks to Replicate Proton and 13C NMR Chemical Shifts Obtained from ωB97X-D/6-31G* Density Functional Calculations

Practical Machine Learning Strategies 4: Using Neural Networks to Replicate Proton and 13C NMR Chemical Shifts Obtained from ωB97X-D/6-31G* Density Functional Calculations

Described are neural networks that accurately reproduce proton and 13C chemical shifts obtained from ωB97X-D/6-31G*//ωB97X-D/6-31G* density functional model GIAO calculations. They support uncharged, closed-shell molecules comprising H, C, N, O, F, S, Cl, and Br. Development involved training to ≈2.7 million equilibrium geometry and chemical shift calculations for a diverse collection of organic molecules (including synthetic drugs and natural products). Referenced to ωB97X-D/6-31G*//ωB97X-D/6-31G* calculations, chemical shifts from neural networks for 601 marine natural products show RMS errors of 0.05 ppm (proton) and 0.76 ppm (13C). RMS errors of 0.09 ppm (proton) and 1.02 ppm (13C) shifts result when equilibrium geometries from a previously described “estimated ωB97X-D/6-31G*” neural network model (trained to reproduce ωB97X-D/6-31G* geometries) are utilized. A second assessment of experimental 13C chemical shifts for 246 natural products is provided. Using neural network models to provide both geometries and chemical shifts: 45% of 13C shifts reproduce experimental values within 1 ppm, 73% within 2 ppm, and 86% within 3 ppm. Utilizing neural network models for both equilibrium geometries and chemical shifts reduces the computational time required for accurate proton and 13C chemical shifts from tens to hundreds of minutes to just a few seconds per molecule.

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来源期刊
Journal of Organic Chemistry
Journal of Organic Chemistry 化学-有机化学
CiteScore
6.20
自引率
11.10%
发文量
1467
审稿时长
2 months
期刊介绍: Journal of Organic Chemistry welcomes original contributions of fundamental research in all branches of the theory and practice of organic chemistry. In selecting manuscripts for publication, the editors place emphasis on the quality and novelty of the work, as well as the breadth of interest to the organic chemistry community.
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