Akila Kathiresan, Jaincy N Jayan, Hee-Su Kim, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
{"title":"Ovoidimarina sediminis gen. nov., sp. nov.,一个从潮滩沉积物中分离出来的玫瑰杆菌科新成员。","authors":"Akila Kathiresan, Jaincy N Jayan, Hee-Su Kim, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee","doi":"10.1099/ijsem.0.006857","DOIUrl":null,"url":null,"abstract":"<p><p>A strictly aerobic, Gram-stain-negative, ovoid-shaped and non-motile bacterium, designated as strain MJ-SS7<sup>T</sup>, was isolated from tidal mudflat sediment collected at a macro-tidal clam farm in Gochang, Republic of Korea. Strain MJ-SS7<sup>T</sup> exhibited oxidase- and catalase-positive activities. Growth occurred at 20-37 °C (optimum: 30 °C), pH 6-8 (optimum: pH 7) and in the presence of 0-9% (w/v) NaCl (optimum: 3%). Phylogenetic analysis based on 16S rRNA gene sequences revealed that MJ-SS7<sup>T</sup> belonged to the family <i>Roseobacteraceae</i>. Its closest relatives, based on sequence similarity, were <i>Rhodophyticola porphyridii</i> KACC 18805<sup>T</sup> (95.9%), <i>Kangsaoukella pontilimi</i> KCTC 72224<sup>T</sup> (95.8%) and <i>Actibacterium pelagium</i> JN33<sup>T</sup> (95.5%). The major fatty acids included summed feature 8 (C<sub>18:1</sub> <i> ω7c</i>/C<sub>18:1</sub> <i> ω6c</i>), C<sub>16:0</sub>, C<sub>16:0</sub> 2OH and C<sub>18:0</sub>. The major polar lipids consisted of phosphatidylglycerol, five unidentified phospholipids, four unidentified aminolipids, two unidentified aminophospholipids and four unidentified lipids. The major respiratory quinone was ubiquinone-10. The genome size was 5.20 Mb, with a DNA G+C content of 63.4 mol%, encoding 5,031 protein-coding genes, 3 rRNA genes and 46 tRNA genes. Comparative genomic analyses confirmed its novelty, with average nucleotide identity (<73%) and average amino acid identity (<70%) values below the species delineation thresholds. Based on polyphasic taxonomic data, strain MJ-SS7<sup>T</sup> represents a novel species of a new genus within the family <i>Roseobacteraceae</i>, for which the name <i>Ovoidimarina sediminis</i> gen. nov., sp. nov. is proposed. The type strain is MJ-SS7<sup>T</sup> (=KEMB 21436<sup>T</sup>=KCTC 8329<sup>T</sup>=JCM 36750<sup>T</sup>).</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"75 8","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Ovoidimarina sediminis</i> gen. nov., sp. nov., a novel member of the <i>Roseobacteraceae</i> isolated from tidal flat sediment.\",\"authors\":\"Akila Kathiresan, Jaincy N Jayan, Hee-Su Kim, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee\",\"doi\":\"10.1099/ijsem.0.006857\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A strictly aerobic, Gram-stain-negative, ovoid-shaped and non-motile bacterium, designated as strain MJ-SS7<sup>T</sup>, was isolated from tidal mudflat sediment collected at a macro-tidal clam farm in Gochang, Republic of Korea. Strain MJ-SS7<sup>T</sup> exhibited oxidase- and catalase-positive activities. Growth occurred at 20-37 °C (optimum: 30 °C), pH 6-8 (optimum: pH 7) and in the presence of 0-9% (w/v) NaCl (optimum: 3%). Phylogenetic analysis based on 16S rRNA gene sequences revealed that MJ-SS7<sup>T</sup> belonged to the family <i>Roseobacteraceae</i>. Its closest relatives, based on sequence similarity, were <i>Rhodophyticola porphyridii</i> KACC 18805<sup>T</sup> (95.9%), <i>Kangsaoukella pontilimi</i> KCTC 72224<sup>T</sup> (95.8%) and <i>Actibacterium pelagium</i> JN33<sup>T</sup> (95.5%). The major fatty acids included summed feature 8 (C<sub>18:1</sub> <i> ω7c</i>/C<sub>18:1</sub> <i> ω6c</i>), C<sub>16:0</sub>, C<sub>16:0</sub> 2OH and C<sub>18:0</sub>. The major polar lipids consisted of phosphatidylglycerol, five unidentified phospholipids, four unidentified aminolipids, two unidentified aminophospholipids and four unidentified lipids. The major respiratory quinone was ubiquinone-10. The genome size was 5.20 Mb, with a DNA G+C content of 63.4 mol%, encoding 5,031 protein-coding genes, 3 rRNA genes and 46 tRNA genes. Comparative genomic analyses confirmed its novelty, with average nucleotide identity (<73%) and average amino acid identity (<70%) values below the species delineation thresholds. Based on polyphasic taxonomic data, strain MJ-SS7<sup>T</sup> represents a novel species of a new genus within the family <i>Roseobacteraceae</i>, for which the name <i>Ovoidimarina sediminis</i> gen. nov., sp. nov. is proposed. 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Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment.
A strictly aerobic, Gram-stain-negative, ovoid-shaped and non-motile bacterium, designated as strain MJ-SS7T, was isolated from tidal mudflat sediment collected at a macro-tidal clam farm in Gochang, Republic of Korea. Strain MJ-SS7T exhibited oxidase- and catalase-positive activities. Growth occurred at 20-37 °C (optimum: 30 °C), pH 6-8 (optimum: pH 7) and in the presence of 0-9% (w/v) NaCl (optimum: 3%). Phylogenetic analysis based on 16S rRNA gene sequences revealed that MJ-SS7T belonged to the family Roseobacteraceae. Its closest relatives, based on sequence similarity, were Rhodophyticola porphyridii KACC 18805T (95.9%), Kangsaoukella pontilimi KCTC 72224T (95.8%) and Actibacterium pelagium JN33T (95.5%). The major fatty acids included summed feature 8 (C18:1 ω7c/C18:1 ω6c), C16:0, C16:0 2OH and C18:0. The major polar lipids consisted of phosphatidylglycerol, five unidentified phospholipids, four unidentified aminolipids, two unidentified aminophospholipids and four unidentified lipids. The major respiratory quinone was ubiquinone-10. The genome size was 5.20 Mb, with a DNA G+C content of 63.4 mol%, encoding 5,031 protein-coding genes, 3 rRNA genes and 46 tRNA genes. Comparative genomic analyses confirmed its novelty, with average nucleotide identity (<73%) and average amino acid identity (<70%) values below the species delineation thresholds. Based on polyphasic taxonomic data, strain MJ-SS7T represents a novel species of a new genus within the family Roseobacteraceae, for which the name Ovoidimarina sediminis gen. nov., sp. nov. is proposed. The type strain is MJ-SS7T (=KEMB 21436T=KCTC 8329T=JCM 36750T).
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
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Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.