Sk. Faisal Ahmed , Md. Masudur Rahman Munna , Md. Hossain Ahmed , Md. Mostafizur Rahman , Minhajul Islam , Esha Mony Bristy
{"title":"光甘草的甘草异黄酮B和光甘草定作为拉沙病毒的有效核蛋白拮抗剂:来自分子对接、动力学模拟、PCA和DFT研究的见解","authors":"Sk. Faisal Ahmed , Md. Masudur Rahman Munna , Md. Hossain Ahmed , Md. Mostafizur Rahman , Minhajul Islam , Esha Mony Bristy","doi":"10.1016/j.jgeb.2025.100544","DOIUrl":null,"url":null,"abstract":"<div><div>Lassa virus causes a severe hemorrhagic disease referred to as Lassa fever. It exhibits a significant mortality rate among people in West and Central Africa. Currently, there is no vaccine available, and ribavirin is the sole treatment option with significant limitations. Given the lack of an effective medication, this study explores bioactive phytocompounds from the plant <em>Glycyrrhiza glabra</em> that may be safer and more effective than ribavirin in combating viruses’ nucleoprotein activity, which is essential for the replication of viruses and host immune evasion. Our virtual screening and multi-stage molecular docking analyses of 69 natural phytochemicals from this plant revealed the compounds licoisoflavone B and glabridin as potential therapeutics. These compounds exhibit strong binding affinities toward the target protein, with superior ADMET profiles. Both compounds also maintained structural stability throughout 100 ns molecular dynamics simulations, while principal component analysis further corroborated their conformational stability, highlighting potential efficiency. Furthermore, density functional theory analysis indicated favorable electronic properties, supporting the compounds’ potential as viable drug candidates. These findings suggested licoisoflavone B and glabridin as potential therapeutic candidates for Lassa fever. However, this study underscores the urgency of further experimental validation to advance these compounds toward novel anti-Lassa virus therapeutics.</div></div>","PeriodicalId":53463,"journal":{"name":"Journal of Genetic Engineering and Biotechnology","volume":"23 3","pages":"Article 100544"},"PeriodicalIF":2.8000,"publicationDate":"2025-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Licoisoflavone B and glabridin from Glycyrrhiza glabra as potent nucleoprotein antagonists of Lassa virus: insights from molecular docking, dynamics simulation, PCA, and DFT studies\",\"authors\":\"Sk. Faisal Ahmed , Md. Masudur Rahman Munna , Md. Hossain Ahmed , Md. Mostafizur Rahman , Minhajul Islam , Esha Mony Bristy\",\"doi\":\"10.1016/j.jgeb.2025.100544\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Lassa virus causes a severe hemorrhagic disease referred to as Lassa fever. It exhibits a significant mortality rate among people in West and Central Africa. Currently, there is no vaccine available, and ribavirin is the sole treatment option with significant limitations. Given the lack of an effective medication, this study explores bioactive phytocompounds from the plant <em>Glycyrrhiza glabra</em> that may be safer and more effective than ribavirin in combating viruses’ nucleoprotein activity, which is essential for the replication of viruses and host immune evasion. Our virtual screening and multi-stage molecular docking analyses of 69 natural phytochemicals from this plant revealed the compounds licoisoflavone B and glabridin as potential therapeutics. These compounds exhibit strong binding affinities toward the target protein, with superior ADMET profiles. Both compounds also maintained structural stability throughout 100 ns molecular dynamics simulations, while principal component analysis further corroborated their conformational stability, highlighting potential efficiency. Furthermore, density functional theory analysis indicated favorable electronic properties, supporting the compounds’ potential as viable drug candidates. These findings suggested licoisoflavone B and glabridin as potential therapeutic candidates for Lassa fever. However, this study underscores the urgency of further experimental validation to advance these compounds toward novel anti-Lassa virus therapeutics.</div></div>\",\"PeriodicalId\":53463,\"journal\":{\"name\":\"Journal of Genetic Engineering and Biotechnology\",\"volume\":\"23 3\",\"pages\":\"Article 100544\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-08-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Genetic Engineering and Biotechnology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1687157X25000885\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Genetic Engineering and Biotechnology","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1687157X25000885","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
Licoisoflavone B and glabridin from Glycyrrhiza glabra as potent nucleoprotein antagonists of Lassa virus: insights from molecular docking, dynamics simulation, PCA, and DFT studies
Lassa virus causes a severe hemorrhagic disease referred to as Lassa fever. It exhibits a significant mortality rate among people in West and Central Africa. Currently, there is no vaccine available, and ribavirin is the sole treatment option with significant limitations. Given the lack of an effective medication, this study explores bioactive phytocompounds from the plant Glycyrrhiza glabra that may be safer and more effective than ribavirin in combating viruses’ nucleoprotein activity, which is essential for the replication of viruses and host immune evasion. Our virtual screening and multi-stage molecular docking analyses of 69 natural phytochemicals from this plant revealed the compounds licoisoflavone B and glabridin as potential therapeutics. These compounds exhibit strong binding affinities toward the target protein, with superior ADMET profiles. Both compounds also maintained structural stability throughout 100 ns molecular dynamics simulations, while principal component analysis further corroborated their conformational stability, highlighting potential efficiency. Furthermore, density functional theory analysis indicated favorable electronic properties, supporting the compounds’ potential as viable drug candidates. These findings suggested licoisoflavone B and glabridin as potential therapeutic candidates for Lassa fever. However, this study underscores the urgency of further experimental validation to advance these compounds toward novel anti-Lassa virus therapeutics.
期刊介绍:
Journal of genetic engineering and biotechnology is devoted to rapid publication of full-length research papers that leads to significant contribution in advancing knowledge in genetic engineering and biotechnology and provide novel perspectives in this research area. JGEB includes all major themes related to genetic engineering and recombinant DNA. The area of interest of JGEB includes but not restricted to: •Plant genetics •Animal genetics •Bacterial enzymes •Agricultural Biotechnology, •Biochemistry, •Biophysics, •Bioinformatics, •Environmental Biotechnology, •Industrial Biotechnology, •Microbial biotechnology, •Medical Biotechnology, •Bioenergy, Biosafety, •Biosecurity, •Bioethics, •GMOS, •Genomic, •Proteomic JGEB accepts