致病性白介素-37b变异体的芯片优先排序和高效可溶性生产的融合平台。

IF 3
Sana Tahir, Jannat Rahim, Saima Sadaf
{"title":"致病性白介素-37b变异体的芯片优先排序和高效可溶性生产的融合平台。","authors":"Sana Tahir, Jannat Rahim, Saima Sadaf","doi":"10.1016/j.biochi.2025.07.026","DOIUrl":null,"url":null,"abstract":"<p><p>Human interleukin-37 isoform 1 (IL-37b) is a key anti-inflammatory cytokine with significant therapeutic potential for inflammatory and immune-mediated disorders. However, its clinical translation is limited by poor understanding of disease-associated genetic variants and lack of an expression system for soluble production. While addressing both challenges, this study presents (a) a prioritized catalog of high-confidence, pathogenic IL-37b variants, and (b) a fusion-based expression platform for its soluble production, providing essential resources for future functional validations. Screening of over 3000 IL-37b variants using various computational tools and multi-algorithm consensus approach identified 25 potentially pathogenic non-synonymous single nucleotide variants (nsSNVs). Amongst these, 16 variants (e.g., D64 V/N, L72R, L111Q, V113F, C122R, F154S, I155 N, Y157C, E168G, G174A, I111T) were predicted to significantly destabilize IL-37b's structure and impair its interaction with the IL-18 receptor. Further, guided by complementary in-silico predictions, an aspartate-rich lunasin peptide yielded the highest soluble expression, constituting ∼40 % of total E. coli cellular proteins. The fusion expression system achieved ∼80 % solubility (compared to <10 % for wild-type IL-37b) and a yield of 167 mg/L following Ni<sup>2+</sup>-affinity purification under optimized conditions (25 °C, lactose autoinduction). The findings underscore the significance of complementary computational workflows in establishing an end-to-end pipeline for variant-to-solution analysis of IL-37b - a dual foundation linking in silico discovery to therapeutic development.</p>","PeriodicalId":93898,"journal":{"name":"Biochimie","volume":" ","pages":""},"PeriodicalIF":3.0000,"publicationDate":"2025-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"In-silico prioritization of pathogenic Interleukin-37b variants and a fusion platform for high-yield soluble production.\",\"authors\":\"Sana Tahir, Jannat Rahim, Saima Sadaf\",\"doi\":\"10.1016/j.biochi.2025.07.026\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Human interleukin-37 isoform 1 (IL-37b) is a key anti-inflammatory cytokine with significant therapeutic potential for inflammatory and immune-mediated disorders. However, its clinical translation is limited by poor understanding of disease-associated genetic variants and lack of an expression system for soluble production. While addressing both challenges, this study presents (a) a prioritized catalog of high-confidence, pathogenic IL-37b variants, and (b) a fusion-based expression platform for its soluble production, providing essential resources for future functional validations. Screening of over 3000 IL-37b variants using various computational tools and multi-algorithm consensus approach identified 25 potentially pathogenic non-synonymous single nucleotide variants (nsSNVs). Amongst these, 16 variants (e.g., D64 V/N, L72R, L111Q, V113F, C122R, F154S, I155 N, Y157C, E168G, G174A, I111T) were predicted to significantly destabilize IL-37b's structure and impair its interaction with the IL-18 receptor. Further, guided by complementary in-silico predictions, an aspartate-rich lunasin peptide yielded the highest soluble expression, constituting ∼40 % of total E. coli cellular proteins. The fusion expression system achieved ∼80 % solubility (compared to <10 % for wild-type IL-37b) and a yield of 167 mg/L following Ni<sup>2+</sup>-affinity purification under optimized conditions (25 °C, lactose autoinduction). The findings underscore the significance of complementary computational workflows in establishing an end-to-end pipeline for variant-to-solution analysis of IL-37b - a dual foundation linking in silico discovery to therapeutic development.</p>\",\"PeriodicalId\":93898,\"journal\":{\"name\":\"Biochimie\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-07-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biochimie\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1016/j.biochi.2025.07.026\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biochimie","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.biochi.2025.07.026","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

人白细胞介素-37异构体1 (IL-37b)是一种关键的抗炎细胞因子,对炎症和免疫介导的疾病具有重要的治疗潜力。然而,由于对疾病相关的遗传变异了解不足,以及缺乏可溶性产物的表达系统,其临床翻译受到限制。在解决这两个挑战的同时,本研究提出了(a)高置信度、致病性IL-37b变异的优先目录,以及(b)基于融合的可溶性表达平台,为未来的功能验证提供必要的资源。使用各种计算工具和多算法共识方法筛选超过3000种IL-37b变异,鉴定出25种潜在致病性非同义单核苷酸变异(nssnv)。其中,16个变异(如D64V/N、L72R、L111Q、V113F、C122R、F154S、I155N、Y157C、E168G、G174A、I111T)被预测会显著破坏IL-37b的结构稳定,并破坏其与IL-18受体的相互作用。此外,在互补的计算机预测的指导下,富含天冬氨酸的lunasin肽产生了最高的可溶性表达,占大肠杆菌细胞总蛋白的约40%。融合表达系统达到了~ 80%的溶解度(与优化条件下(25°C,乳糖自诱导)的2+亲和纯化相比)。这些发现强调了互补计算工作流程在建立IL-37b变体到溶液分析的端到端管道中的重要性,这是将硅发现与治疗开发联系起来的双重基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In-silico prioritization of pathogenic Interleukin-37b variants and a fusion platform for high-yield soluble production.

Human interleukin-37 isoform 1 (IL-37b) is a key anti-inflammatory cytokine with significant therapeutic potential for inflammatory and immune-mediated disorders. However, its clinical translation is limited by poor understanding of disease-associated genetic variants and lack of an expression system for soluble production. While addressing both challenges, this study presents (a) a prioritized catalog of high-confidence, pathogenic IL-37b variants, and (b) a fusion-based expression platform for its soluble production, providing essential resources for future functional validations. Screening of over 3000 IL-37b variants using various computational tools and multi-algorithm consensus approach identified 25 potentially pathogenic non-synonymous single nucleotide variants (nsSNVs). Amongst these, 16 variants (e.g., D64 V/N, L72R, L111Q, V113F, C122R, F154S, I155 N, Y157C, E168G, G174A, I111T) were predicted to significantly destabilize IL-37b's structure and impair its interaction with the IL-18 receptor. Further, guided by complementary in-silico predictions, an aspartate-rich lunasin peptide yielded the highest soluble expression, constituting ∼40 % of total E. coli cellular proteins. The fusion expression system achieved ∼80 % solubility (compared to <10 % for wild-type IL-37b) and a yield of 167 mg/L following Ni2+-affinity purification under optimized conditions (25 °C, lactose autoinduction). The findings underscore the significance of complementary computational workflows in establishing an end-to-end pipeline for variant-to-solution analysis of IL-37b - a dual foundation linking in silico discovery to therapeutic development.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信