[时空过滤模型分析血吸虫病报告病例时空分布的可行性]。

Q3 Medicine
J Xu, Z Wang, F Gao, Z Zhang
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Meteorological data were interpolated using the inverse-distance weighting method, and the annual average air temperature and annual precipitation were calculated in each county (city, district). The centroid of the county (city, district) where schistosomiasis cases were reported was extracted using the software ArcGIS 10.0, and the Euclidean distance from each centroid to the Yangtze River was calculated as the distance between that county (city, district) and the Yangtze River. The global Moran's <i>I</i> of the prevalence of <i>S. japonicum</i> human infections in Anhui Province for each year from 1997 to 2010 were calculated to analyze the spatial autocorrelation. A spatial weight matrix was constructed using Rook adjacency, and a first-order temporal weight matrix was built to quantify the relationship between disease changes over time. Subsequently, a spatiotemporal structure matrix was constructed. A negative binomial model was built based on the spatiotemporal structure matrix and data pertaining to reported schistosomiasis cases, and a linear model was created between the residual of the model and candidate set feature vectors to determine the optimal subset composition of the spatiotemporal filter through stepwise regression. Then, a spatio-temporal filtering model was constructed using the negative binomial model. Negative binomial models, Bayesian spatial models, and Bayesian spatiotemporal models were constructed and compared with the spatiotemporal filtering model to validate the performance of the spatiotemporal filtering model, and cross-validation was conducted for each model. The goodness of fit was evaluated using the deviance information criterion (DIC) and Watanabe-Akaike information criterion (WAIC), and the effectiveness of model validation was assessed using mean squared error (MSE), while the accuracy of assessment results was assessed using coefficients and their 95% confidence intervals (<i>CI</i>), and the computational efficiency was assessed based on the running time of the model. The four feature vectors with the largest Moran's <i>I</i> values were selected to identify regions with autocorrelation through their schematic diagrams to investigate the differences in spatiotemporal patterns of specific regions.</p><p><strong>Results: </strong>Of all models created, the spatiotemporal filtering model exhibited the highest goodness of fit (DIC = 3 240.70, WAIC = 3 257.80), the best model validation effectiveness (MSE = 42 617.52), and the runtime was 3.18 s, exhibiting the optimal performance. Across all modeling results, the distance from the Yangtze River showed a negative correlation with the number of reported schistosomiasis cases (coefficient values = -4.93 to -3.78, none of the 95% <i>CI</i>s included 0), and annual average air temperature or average precipitation posed no significant effects on numbers of reported schistosomiasis cases (both of the 95% <i>CI</i>s included 0). 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引用次数: 0

摘要

目的:探讨时空过滤模型在血吸虫病报告病例分析中的可行性,为血吸虫病防治相关复杂数据分析提供参考。方法:收集安徽省疾病预防控制中心1997 - 2010年报告的血吸虫病病例的人口学和流行病学资料,计算每年人感染日本血吸虫的流行率。气象资料采集自1997 - 2010年国家气象信息中心安徽省各县(市、区)气象站报告血吸虫病病例的气象资料,包括月平均气温和降水量。采用反距离加权法插值气象资料,计算各县(市、区)年平均气温和年降水量。利用ArcGIS 10.0软件提取报告血吸虫病病例的县(市、区)质心,计算每个质心到长江的欧氏距离,作为该县(市、区)到长江的距离。计算1997 - 2010年安徽省每年日本血吸虫人感染流行的全球Moran’s I,分析其空间自相关性。利用Rook邻接构造空间权矩阵,建立一阶时间权矩阵,量化疾病随时间变化的关系。随后,构建了时空结构矩阵。基于时空结构矩阵和血吸虫病例报告数据建立负二项模型,并在模型残差与候选特征向量集之间建立线性模型,通过逐步回归确定时空滤波器的最优子集组成。然后,利用负二项模型构建时空滤波模型。构建负二项模型、贝叶斯空间模型和贝叶斯时空模型,并与时空滤波模型进行对比,验证时空滤波模型的性能,并对各模型进行交叉验证。采用偏差信息准则(DIC)和Watanabe-Akaike信息准则(WAIC)评估拟合优度,采用均方误差(MSE)评估模型验证的有效性,采用系数及其95%置信区间(CI)评估评估结果的准确性,并根据模型运行时间评估计算效率。选取Moran’s I值最大的4个特征向量,通过其示意图识别具有自相关的区域,研究特定区域的时空格局差异。结果:在所有模型中,时空滤波模型的拟合优度最高(DIC = 3 240.70, WAIC = 3 257.80),模型验证有效性最佳(MSE = 42 617.52),运行时间为3.18 s,表现出最佳性能。在所有建模结果中,与长江的距离与报告血吸虫病病例数呈负相关(系数值为-4.93 ~ -3.78,95% ci均不包含0),年平均气温或平均降水对报告血吸虫病病例数无显著影响(95% ci均包含0)。特征向量示意图显示,安徽省血吸虫病传播可能与水系有关,局部聚集模式主要集中在该省血吸虫病流行区北部和西部。结论:时空过滤模型是一种有效的时空分析方法,具有建模简单、操作方便、结果准确、灵活性好等特点,可作为传统复杂时空模型在血吸虫病研究数据分析中的有效替代方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
[Feasibility of the spatiotemporal filtering model for analyzing the spatiotemporal distribution of reported schistosomiasis cases].

Objective: To investigate the feasibility of the spatiotemporal filtering model in analysis of reported schistosomiasis cases, so as to provide insights into analysis of complicated data pertaining to schistosomiasis control.

Methods: Demographic and epidemiological data of reported schistosomiasis cases in Anhui Province from 1997 to 2010 were collected from Anhui Provincial Center for Disease Control and Prevention, and the annual prevalence of Schistosoma japonicum human infections was calculated. The meteorological data were captured from meteorological stations in counties (cities, districts) of Anhui Province where schistosomiasis cases were reported from 1997 to 2010 at the National Meteorological Information Center, including monthly average air temperature and precipitation. Meteorological data were interpolated using the inverse-distance weighting method, and the annual average air temperature and annual precipitation were calculated in each county (city, district). The centroid of the county (city, district) where schistosomiasis cases were reported was extracted using the software ArcGIS 10.0, and the Euclidean distance from each centroid to the Yangtze River was calculated as the distance between that county (city, district) and the Yangtze River. The global Moran's I of the prevalence of S. japonicum human infections in Anhui Province for each year from 1997 to 2010 were calculated to analyze the spatial autocorrelation. A spatial weight matrix was constructed using Rook adjacency, and a first-order temporal weight matrix was built to quantify the relationship between disease changes over time. Subsequently, a spatiotemporal structure matrix was constructed. A negative binomial model was built based on the spatiotemporal structure matrix and data pertaining to reported schistosomiasis cases, and a linear model was created between the residual of the model and candidate set feature vectors to determine the optimal subset composition of the spatiotemporal filter through stepwise regression. Then, a spatio-temporal filtering model was constructed using the negative binomial model. Negative binomial models, Bayesian spatial models, and Bayesian spatiotemporal models were constructed and compared with the spatiotemporal filtering model to validate the performance of the spatiotemporal filtering model, and cross-validation was conducted for each model. The goodness of fit was evaluated using the deviance information criterion (DIC) and Watanabe-Akaike information criterion (WAIC), and the effectiveness of model validation was assessed using mean squared error (MSE), while the accuracy of assessment results was assessed using coefficients and their 95% confidence intervals (CI), and the computational efficiency was assessed based on the running time of the model. The four feature vectors with the largest Moran's I values were selected to identify regions with autocorrelation through their schematic diagrams to investigate the differences in spatiotemporal patterns of specific regions.

Results: Of all models created, the spatiotemporal filtering model exhibited the highest goodness of fit (DIC = 3 240.70, WAIC = 3 257.80), the best model validation effectiveness (MSE = 42 617.52), and the runtime was 3.18 s, exhibiting the optimal performance. Across all modeling results, the distance from the Yangtze River showed a negative correlation with the number of reported schistosomiasis cases (coefficient values = -4.93 to -3.78, none of the 95% CIs included 0), and annual average air temperature or average precipitation posed no significant effects on numbers of reported schistosomiasis cases (both of the 95% CIs included 0). Schematic diagrams of feature vectors showed that the transmission of schistosomiasis might be associated with water systems in Anhui Province, and localized clustering patterns were primarily concentrated in the northern and western parts of schistosomiasis-endemic areas in the province.

Conclusions: The spatiotemporal filtering model is an effective spatiotemporal analysis characterized by simple modeling, user-friendly operation, accurate results and good flexibility, which may serve as an efficient alternative to conventional complex spatiotemporal models for data analysis in schistosomiasis researches.

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来源期刊
中国血吸虫病防治杂志
中国血吸虫病防治杂志 Medicine-Medicine (all)
CiteScore
1.30
自引率
0.00%
发文量
7021
期刊介绍: Chinese Journal of Schistosomiasis Control (ISSN: 1005-6661, CN: 32-1374/R), founded in 1989, is a technical and scientific journal under the supervision of Jiangsu Provincial Health Commission and organised by Jiangsu Institute of Schistosomiasis Control. It is a scientific and technical journal under the supervision of Jiangsu Provincial Health Commission and sponsored by Jiangsu Institute of Schistosomiasis Prevention and Control. The journal carries out the policy of prevention-oriented, control-oriented, nationwide and grassroots, adheres to the tenet of scientific research service for the prevention and treatment of schistosomiasis and other parasitic diseases, and mainly publishes academic papers reflecting the latest achievements and dynamics of prevention and treatment of schistosomiasis and other parasitic diseases, scientific research and management, etc. The main columns are Guest Contributions, Experts‘ Commentary, Experts’ Perspectives, Experts' Forums, Theses, Prevention and Treatment Research, Experimental Research, The main columns include Guest Contributions, Expert Commentaries, Expert Perspectives, Expert Forums, Treatises, Prevention and Control Studies, Experimental Studies, Clinical Studies, Prevention and Control Experiences, Prevention and Control Management, Reviews, Case Reports, and Information, etc. The journal is a useful reference material for the professional and technical personnel of schistosomiasis and parasitic disease prevention and control research, management workers, and teachers and students of medical schools.    The journal is now included in important domestic databases, such as Chinese Core List (8th edition), China Science Citation Database (Core Edition), China Science and Technology Core Journals (Statistical Source Journals), and is also included in MEDLINE/PubMed, Scopus, EBSCO, Chemical Abstract, Embase, Zoological Record, JSTChina, Ulrichsweb, Western Pacific Region Index Medicus, CABI and other international authoritative databases.
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