Cheng Fan, Maodong Li, Sihao Yuan, Zhaoxin Xie, Dechin Chen, Yi Isaac Yang, Yi Qin Gao
{"title":"使用人工智能增强的分子模拟框架执行路径积分分子动力学。","authors":"Cheng Fan, Maodong Li, Sihao Yuan, Zhaoxin Xie, Dechin Chen, Yi Isaac Yang, Yi Qin Gao","doi":"10.1021/acs.jctc.5c00666","DOIUrl":null,"url":null,"abstract":"<p><p>This study employed an artificial intelligence-enhanced molecular simulation framework to enable efficient path integral molecular dynamics (PIMD) simulations. Owing to its modular architecture and high-throughput capabilities, the framework effectively mitigates the computational complexity and resource-intensive limitations associated with conventional PIMD approaches. By integrating machine learning force fields (MLFFs) into the framework, we rigorously tested its performance through two representative cases: a small-molecule reaction system (double-proton transfer in the formic acid dimer) and a bulk-phase transition system (water-ice phase transformation). Computational results demonstrate that the proposed framework achieves accelerated PIMD simulations while preserving the quantum mechanical accuracy. These findings show that nuclear quantum effects can be captured for complex molecular systems using relatively low computational cost.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":""},"PeriodicalIF":5.5000,"publicationDate":"2025-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Performing Path Integral Molecular Dynamics Using an Artificial Intelligence-Enhanced Molecular Simulation Framework.\",\"authors\":\"Cheng Fan, Maodong Li, Sihao Yuan, Zhaoxin Xie, Dechin Chen, Yi Isaac Yang, Yi Qin Gao\",\"doi\":\"10.1021/acs.jctc.5c00666\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>This study employed an artificial intelligence-enhanced molecular simulation framework to enable efficient path integral molecular dynamics (PIMD) simulations. Owing to its modular architecture and high-throughput capabilities, the framework effectively mitigates the computational complexity and resource-intensive limitations associated with conventional PIMD approaches. By integrating machine learning force fields (MLFFs) into the framework, we rigorously tested its performance through two representative cases: a small-molecule reaction system (double-proton transfer in the formic acid dimer) and a bulk-phase transition system (water-ice phase transformation). Computational results demonstrate that the proposed framework achieves accelerated PIMD simulations while preserving the quantum mechanical accuracy. These findings show that nuclear quantum effects can be captured for complex molecular systems using relatively low computational cost.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":5.5000,\"publicationDate\":\"2025-07-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.5c00666\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00666","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Performing Path Integral Molecular Dynamics Using an Artificial Intelligence-Enhanced Molecular Simulation Framework.
This study employed an artificial intelligence-enhanced molecular simulation framework to enable efficient path integral molecular dynamics (PIMD) simulations. Owing to its modular architecture and high-throughput capabilities, the framework effectively mitigates the computational complexity and resource-intensive limitations associated with conventional PIMD approaches. By integrating machine learning force fields (MLFFs) into the framework, we rigorously tested its performance through two representative cases: a small-molecule reaction system (double-proton transfer in the formic acid dimer) and a bulk-phase transition system (water-ice phase transformation). Computational results demonstrate that the proposed framework achieves accelerated PIMD simulations while preserving the quantum mechanical accuracy. These findings show that nuclear quantum effects can be captured for complex molecular systems using relatively low computational cost.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.