9-甲基-8-氧鸟嘌呤自由基阳离子与一氧化氮反应的电子自旋、动能和立体动力学控制。

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Jonathan Benny, Jianbo Liu
{"title":"9-甲基-8-氧鸟嘌呤自由基阳离子与一氧化氮反应的电子自旋、动能和立体动力学控制。","authors":"Jonathan Benny, Jianbo Liu","doi":"10.1063/5.0283629","DOIUrl":null,"url":null,"abstract":"<p><p>8-oxoguanine (OG) is a prevalent DNA lesion and exhibits a significantly lower oxidation potential than natural nucleic acid components, making the formation of OG•+ radical cation the most efficient hole trap in the one-electron oxidation of DNA. Nitric oxide (•NO) is a precursor to reactive nitrogen species and plays multiple roles in biological activities, including DNA base nitrosation and enhancement of DNA radiosensitivity in radiotherapy. Herein, we report the reaction of •NO with 9-methyl-8-oxoguanine radical cation (9MOG•+), a model compound for OG•+ nucleoside. 9MOG•+ was generated via redox dissociation of [CuII(9MOG)3]•2+ and its reaction with •NO was investigated using electrospray ionization guided-ion beam mass spectrometry as a function of kinetic energy. Multiple coupled reaction potential energy surfaces were computed using spin-projected ωB97XD, DLPNO-CCSD(T), and CASPT2 methods, with theoretical results benchmarked against experimentally determined reaction thermodynamics. The synergistic experiment and computation revealed distinct reaction mechanisms and dynamics across the open-shell singlet, close-shell singlet, and triplet states formed in radical-radical collisions. Comparison with the reaction of •NO with guanine radical cation (G•+) [Benny and Liu, J. Chem. Phys. 159, 085102 (2023) and Benny et al., J. Chem. Phys. 161, 125101 (2024)] addressed the resemblances and distinctions between •NO reaction dynamics with OG•+ vs G•+. On the one hand, both systems present spin-orbit charge transfer, forming vibrationally excited NO+(ν+ = 1) product ions. On the other hand, OG•+ demonstrates lower nitrosation efficiency than G•+ due to few pathways, less favorable thermodynamics, and constrained stereodynamics. Only the closed-shell singlet [5-NO-9MOG]+ product was detected. This study provides new insights into •NO-mediated DNA damage.</p>","PeriodicalId":15313,"journal":{"name":"Journal of Chemical Physics","volume":"163 4","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2025-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Electron spin, kinetic energy, and stereodynamics control of the reaction between 9-methyl-8-oxoguanine radical cation and nitric oxide.\",\"authors\":\"Jonathan Benny, Jianbo Liu\",\"doi\":\"10.1063/5.0283629\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>8-oxoguanine (OG) is a prevalent DNA lesion and exhibits a significantly lower oxidation potential than natural nucleic acid components, making the formation of OG•+ radical cation the most efficient hole trap in the one-electron oxidation of DNA. Nitric oxide (•NO) is a precursor to reactive nitrogen species and plays multiple roles in biological activities, including DNA base nitrosation and enhancement of DNA radiosensitivity in radiotherapy. Herein, we report the reaction of •NO with 9-methyl-8-oxoguanine radical cation (9MOG•+), a model compound for OG•+ nucleoside. 9MOG•+ was generated via redox dissociation of [CuII(9MOG)3]•2+ and its reaction with •NO was investigated using electrospray ionization guided-ion beam mass spectrometry as a function of kinetic energy. Multiple coupled reaction potential energy surfaces were computed using spin-projected ωB97XD, DLPNO-CCSD(T), and CASPT2 methods, with theoretical results benchmarked against experimentally determined reaction thermodynamics. The synergistic experiment and computation revealed distinct reaction mechanisms and dynamics across the open-shell singlet, close-shell singlet, and triplet states formed in radical-radical collisions. Comparison with the reaction of •NO with guanine radical cation (G•+) [Benny and Liu, J. Chem. Phys. 159, 085102 (2023) and Benny et al., J. Chem. Phys. 161, 125101 (2024)] addressed the resemblances and distinctions between •NO reaction dynamics with OG•+ vs G•+. On the one hand, both systems present spin-orbit charge transfer, forming vibrationally excited NO+(ν+ = 1) product ions. On the other hand, OG•+ demonstrates lower nitrosation efficiency than G•+ due to few pathways, less favorable thermodynamics, and constrained stereodynamics. Only the closed-shell singlet [5-NO-9MOG]+ product was detected. This study provides new insights into •NO-mediated DNA damage.</p>\",\"PeriodicalId\":15313,\"journal\":{\"name\":\"Journal of Chemical Physics\",\"volume\":\"163 4\",\"pages\":\"\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-07-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Physics\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1063/5.0283629\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Physics","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1063/5.0283629","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

8-氧鸟嘌呤(OG)是一种常见的DNA损伤,其氧化电位明显低于天然核酸成分,这使得OG•+自由基阳离子的形成成为DNA单电子氧化中最有效的空穴陷阱。一氧化氮(NO)是活性氮的前体,在生物活性中起着多种作用,包括DNA碱基亚硝化和放射治疗中DNA放射敏感性的增强。本文报道了•NO与9-甲基-8-氧鸟嘌呤自由基阳离子(9MOG•+)的反应,9MOG•+是OG•+核苷的模型化合物。[CuII(9MOG)3]•2+通过氧化还原解离生成9MOG•+,并利用电喷雾电离引导离子束质谱法研究了其与•NO的反应。采用自旋投影法计算了多个耦合反应位能面,并以实验确定的反应热力学为基准进行了理论计算。协同实验和计算揭示了在自由基-自由基碰撞中形成的开壳层单重态、闭壳层单重态和三重态之间不同的反应机制和动力学。•NO与鸟嘌呤自由基阳离子(G•+)反应的比较[Benny and Liu, J. Chem.][j] .中国生物医学工程学报,2016,38(2):481 - 481。物理学报,161,125101(2024)]讨论了OG•+与G•+的NO反应动力学的相似性和区别。一方面,两种体系都存在自旋轨道电荷转移,形成振动激发的NO+(ν+ = 1)产物离子。另一方面,OG•+表现出比G•+更低的亚硝化效率,这是由于途径较少、热力学条件较差以及立体动力学受限。仅检测到封闭壳单线态[5-NO-9MOG]+产物。这项研究为no介导的DNA损伤提供了新的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Electron spin, kinetic energy, and stereodynamics control of the reaction between 9-methyl-8-oxoguanine radical cation and nitric oxide.

8-oxoguanine (OG) is a prevalent DNA lesion and exhibits a significantly lower oxidation potential than natural nucleic acid components, making the formation of OG•+ radical cation the most efficient hole trap in the one-electron oxidation of DNA. Nitric oxide (•NO) is a precursor to reactive nitrogen species and plays multiple roles in biological activities, including DNA base nitrosation and enhancement of DNA radiosensitivity in radiotherapy. Herein, we report the reaction of •NO with 9-methyl-8-oxoguanine radical cation (9MOG•+), a model compound for OG•+ nucleoside. 9MOG•+ was generated via redox dissociation of [CuII(9MOG)3]•2+ and its reaction with •NO was investigated using electrospray ionization guided-ion beam mass spectrometry as a function of kinetic energy. Multiple coupled reaction potential energy surfaces were computed using spin-projected ωB97XD, DLPNO-CCSD(T), and CASPT2 methods, with theoretical results benchmarked against experimentally determined reaction thermodynamics. The synergistic experiment and computation revealed distinct reaction mechanisms and dynamics across the open-shell singlet, close-shell singlet, and triplet states formed in radical-radical collisions. Comparison with the reaction of •NO with guanine radical cation (G•+) [Benny and Liu, J. Chem. Phys. 159, 085102 (2023) and Benny et al., J. Chem. Phys. 161, 125101 (2024)] addressed the resemblances and distinctions between •NO reaction dynamics with OG•+ vs G•+. On the one hand, both systems present spin-orbit charge transfer, forming vibrationally excited NO+(ν+ = 1) product ions. On the other hand, OG•+ demonstrates lower nitrosation efficiency than G•+ due to few pathways, less favorable thermodynamics, and constrained stereodynamics. Only the closed-shell singlet [5-NO-9MOG]+ product was detected. This study provides new insights into •NO-mediated DNA damage.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信