{"title":"9-甲基-8-氧鸟嘌呤自由基阳离子与一氧化氮反应的电子自旋、动能和立体动力学控制。","authors":"Jonathan Benny, Jianbo Liu","doi":"10.1063/5.0283629","DOIUrl":null,"url":null,"abstract":"<p><p>8-oxoguanine (OG) is a prevalent DNA lesion and exhibits a significantly lower oxidation potential than natural nucleic acid components, making the formation of OG•+ radical cation the most efficient hole trap in the one-electron oxidation of DNA. Nitric oxide (•NO) is a precursor to reactive nitrogen species and plays multiple roles in biological activities, including DNA base nitrosation and enhancement of DNA radiosensitivity in radiotherapy. Herein, we report the reaction of •NO with 9-methyl-8-oxoguanine radical cation (9MOG•+), a model compound for OG•+ nucleoside. 9MOG•+ was generated via redox dissociation of [CuII(9MOG)3]•2+ and its reaction with •NO was investigated using electrospray ionization guided-ion beam mass spectrometry as a function of kinetic energy. Multiple coupled reaction potential energy surfaces were computed using spin-projected ωB97XD, DLPNO-CCSD(T), and CASPT2 methods, with theoretical results benchmarked against experimentally determined reaction thermodynamics. The synergistic experiment and computation revealed distinct reaction mechanisms and dynamics across the open-shell singlet, close-shell singlet, and triplet states formed in radical-radical collisions. Comparison with the reaction of •NO with guanine radical cation (G•+) [Benny and Liu, J. Chem. Phys. 159, 085102 (2023) and Benny et al., J. Chem. Phys. 161, 125101 (2024)] addressed the resemblances and distinctions between •NO reaction dynamics with OG•+ vs G•+. On the one hand, both systems present spin-orbit charge transfer, forming vibrationally excited NO+(ν+ = 1) product ions. On the other hand, OG•+ demonstrates lower nitrosation efficiency than G•+ due to few pathways, less favorable thermodynamics, and constrained stereodynamics. Only the closed-shell singlet [5-NO-9MOG]+ product was detected. This study provides new insights into •NO-mediated DNA damage.</p>","PeriodicalId":15313,"journal":{"name":"Journal of Chemical Physics","volume":"163 4","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2025-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Electron spin, kinetic energy, and stereodynamics control of the reaction between 9-methyl-8-oxoguanine radical cation and nitric oxide.\",\"authors\":\"Jonathan Benny, Jianbo Liu\",\"doi\":\"10.1063/5.0283629\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>8-oxoguanine (OG) is a prevalent DNA lesion and exhibits a significantly lower oxidation potential than natural nucleic acid components, making the formation of OG•+ radical cation the most efficient hole trap in the one-electron oxidation of DNA. Nitric oxide (•NO) is a precursor to reactive nitrogen species and plays multiple roles in biological activities, including DNA base nitrosation and enhancement of DNA radiosensitivity in radiotherapy. Herein, we report the reaction of •NO with 9-methyl-8-oxoguanine radical cation (9MOG•+), a model compound for OG•+ nucleoside. 9MOG•+ was generated via redox dissociation of [CuII(9MOG)3]•2+ and its reaction with •NO was investigated using electrospray ionization guided-ion beam mass spectrometry as a function of kinetic energy. Multiple coupled reaction potential energy surfaces were computed using spin-projected ωB97XD, DLPNO-CCSD(T), and CASPT2 methods, with theoretical results benchmarked against experimentally determined reaction thermodynamics. The synergistic experiment and computation revealed distinct reaction mechanisms and dynamics across the open-shell singlet, close-shell singlet, and triplet states formed in radical-radical collisions. Comparison with the reaction of •NO with guanine radical cation (G•+) [Benny and Liu, J. Chem. Phys. 159, 085102 (2023) and Benny et al., J. Chem. Phys. 161, 125101 (2024)] addressed the resemblances and distinctions between •NO reaction dynamics with OG•+ vs G•+. On the one hand, both systems present spin-orbit charge transfer, forming vibrationally excited NO+(ν+ = 1) product ions. On the other hand, OG•+ demonstrates lower nitrosation efficiency than G•+ due to few pathways, less favorable thermodynamics, and constrained stereodynamics. Only the closed-shell singlet [5-NO-9MOG]+ product was detected. 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引用次数: 0
摘要
8-氧鸟嘌呤(OG)是一种常见的DNA损伤,其氧化电位明显低于天然核酸成分,这使得OG•+自由基阳离子的形成成为DNA单电子氧化中最有效的空穴陷阱。一氧化氮(NO)是活性氮的前体,在生物活性中起着多种作用,包括DNA碱基亚硝化和放射治疗中DNA放射敏感性的增强。本文报道了•NO与9-甲基-8-氧鸟嘌呤自由基阳离子(9MOG•+)的反应,9MOG•+是OG•+核苷的模型化合物。[CuII(9MOG)3]•2+通过氧化还原解离生成9MOG•+,并利用电喷雾电离引导离子束质谱法研究了其与•NO的反应。采用自旋投影法计算了多个耦合反应位能面,并以实验确定的反应热力学为基准进行了理论计算。协同实验和计算揭示了在自由基-自由基碰撞中形成的开壳层单重态、闭壳层单重态和三重态之间不同的反应机制和动力学。•NO与鸟嘌呤自由基阳离子(G•+)反应的比较[Benny and Liu, J. Chem.][j] .中国生物医学工程学报,2016,38(2):481 - 481。物理学报,161,125101(2024)]讨论了OG•+与G•+的NO反应动力学的相似性和区别。一方面,两种体系都存在自旋轨道电荷转移,形成振动激发的NO+(ν+ = 1)产物离子。另一方面,OG•+表现出比G•+更低的亚硝化效率,这是由于途径较少、热力学条件较差以及立体动力学受限。仅检测到封闭壳单线态[5-NO-9MOG]+产物。这项研究为no介导的DNA损伤提供了新的见解。
Electron spin, kinetic energy, and stereodynamics control of the reaction between 9-methyl-8-oxoguanine radical cation and nitric oxide.
8-oxoguanine (OG) is a prevalent DNA lesion and exhibits a significantly lower oxidation potential than natural nucleic acid components, making the formation of OG•+ radical cation the most efficient hole trap in the one-electron oxidation of DNA. Nitric oxide (•NO) is a precursor to reactive nitrogen species and plays multiple roles in biological activities, including DNA base nitrosation and enhancement of DNA radiosensitivity in radiotherapy. Herein, we report the reaction of •NO with 9-methyl-8-oxoguanine radical cation (9MOG•+), a model compound for OG•+ nucleoside. 9MOG•+ was generated via redox dissociation of [CuII(9MOG)3]•2+ and its reaction with •NO was investigated using electrospray ionization guided-ion beam mass spectrometry as a function of kinetic energy. Multiple coupled reaction potential energy surfaces were computed using spin-projected ωB97XD, DLPNO-CCSD(T), and CASPT2 methods, with theoretical results benchmarked against experimentally determined reaction thermodynamics. The synergistic experiment and computation revealed distinct reaction mechanisms and dynamics across the open-shell singlet, close-shell singlet, and triplet states formed in radical-radical collisions. Comparison with the reaction of •NO with guanine radical cation (G•+) [Benny and Liu, J. Chem. Phys. 159, 085102 (2023) and Benny et al., J. Chem. Phys. 161, 125101 (2024)] addressed the resemblances and distinctions between •NO reaction dynamics with OG•+ vs G•+. On the one hand, both systems present spin-orbit charge transfer, forming vibrationally excited NO+(ν+ = 1) product ions. On the other hand, OG•+ demonstrates lower nitrosation efficiency than G•+ due to few pathways, less favorable thermodynamics, and constrained stereodynamics. Only the closed-shell singlet [5-NO-9MOG]+ product was detected. This study provides new insights into •NO-mediated DNA damage.
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