Orkid Coskuner-Weber, Pier Luigi Gentili, Vladimir N Uversky
{"title":"整合化学人工智能和认知计算用于生物途径的预测分析:一个内在无序蛋白质的案例。","authors":"Orkid Coskuner-Weber, Pier Luigi Gentili, Vladimir N Uversky","doi":"10.1007/s12551-025-01286-x","DOIUrl":null,"url":null,"abstract":"<p><p>Incorporating biological molecular interactions into cognitive computing through chemical artificial intelligence (AI) presents a transformative approach with far-reaching implications for various fields, such as protein engineering, drug discovery, bioinformatics, synthetic biology, and unconventional computing. Cognitive computing, designed to emulate human thought processes and enhance decision-making, utilizes technologies, such as machine learning, natural language processing, and speech recognition for better human-system interactions. Despite advancements, the integration of biological processes with cognitive computing remains fraught with challenges, particularly due to the complexity and scale of biological data. Here, we explore the possible benefits of connecting cognitive computing with biological knowledge, including more precise models of protein interactions, gene regulation, and metabolic pathways, which could lead to personalized treatments and early disease detection. Furthermore, we discuss the intersection of cognitive computing and biophysical research techniques, examining how analogies from neuroscience-like synaptic communication and neural plasticity-can inform the development of neuromorphic chips and enhance predictive models. Additionally, the study delves into intrinsically disordered proteins (IDPs) and their crucial roles in brain function and information processing. These insights are pivotal for advancing neuroinformatics and creating more adaptive, context-aware cognitive computing algorithms. By leveraging biophysical investigations and the unique properties of IDPs, the research aims to bridge the gap between the biological processes and their computational analogs, proposing novel methods, such as chemical AI implemented in liquid solutions as promising avenues for future advancements.</p>","PeriodicalId":9094,"journal":{"name":"Biophysical reviews","volume":"17 3","pages":"737-758"},"PeriodicalIF":3.7000,"publicationDate":"2025-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12290163/pdf/","citationCount":"0","resultStr":"{\"title\":\"Integrating chemical artificial intelligence and cognitive computing for predictive analysis of biological pathways: a case for intrinsically disordered proteins.\",\"authors\":\"Orkid Coskuner-Weber, Pier Luigi Gentili, Vladimir N Uversky\",\"doi\":\"10.1007/s12551-025-01286-x\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Incorporating biological molecular interactions into cognitive computing through chemical artificial intelligence (AI) presents a transformative approach with far-reaching implications for various fields, such as protein engineering, drug discovery, bioinformatics, synthetic biology, and unconventional computing. Cognitive computing, designed to emulate human thought processes and enhance decision-making, utilizes technologies, such as machine learning, natural language processing, and speech recognition for better human-system interactions. Despite advancements, the integration of biological processes with cognitive computing remains fraught with challenges, particularly due to the complexity and scale of biological data. Here, we explore the possible benefits of connecting cognitive computing with biological knowledge, including more precise models of protein interactions, gene regulation, and metabolic pathways, which could lead to personalized treatments and early disease detection. Furthermore, we discuss the intersection of cognitive computing and biophysical research techniques, examining how analogies from neuroscience-like synaptic communication and neural plasticity-can inform the development of neuromorphic chips and enhance predictive models. Additionally, the study delves into intrinsically disordered proteins (IDPs) and their crucial roles in brain function and information processing. These insights are pivotal for advancing neuroinformatics and creating more adaptive, context-aware cognitive computing algorithms. By leveraging biophysical investigations and the unique properties of IDPs, the research aims to bridge the gap between the biological processes and their computational analogs, proposing novel methods, such as chemical AI implemented in liquid solutions as promising avenues for future advancements.</p>\",\"PeriodicalId\":9094,\"journal\":{\"name\":\"Biophysical reviews\",\"volume\":\"17 3\",\"pages\":\"737-758\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2025-02-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12290163/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biophysical reviews\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1007/s12551-025-01286-x\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/6/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"BIOPHYSICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biophysical reviews","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s12551-025-01286-x","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/6/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"BIOPHYSICS","Score":null,"Total":0}
Integrating chemical artificial intelligence and cognitive computing for predictive analysis of biological pathways: a case for intrinsically disordered proteins.
Incorporating biological molecular interactions into cognitive computing through chemical artificial intelligence (AI) presents a transformative approach with far-reaching implications for various fields, such as protein engineering, drug discovery, bioinformatics, synthetic biology, and unconventional computing. Cognitive computing, designed to emulate human thought processes and enhance decision-making, utilizes technologies, such as machine learning, natural language processing, and speech recognition for better human-system interactions. Despite advancements, the integration of biological processes with cognitive computing remains fraught with challenges, particularly due to the complexity and scale of biological data. Here, we explore the possible benefits of connecting cognitive computing with biological knowledge, including more precise models of protein interactions, gene regulation, and metabolic pathways, which could lead to personalized treatments and early disease detection. Furthermore, we discuss the intersection of cognitive computing and biophysical research techniques, examining how analogies from neuroscience-like synaptic communication and neural plasticity-can inform the development of neuromorphic chips and enhance predictive models. Additionally, the study delves into intrinsically disordered proteins (IDPs) and their crucial roles in brain function and information processing. These insights are pivotal for advancing neuroinformatics and creating more adaptive, context-aware cognitive computing algorithms. By leveraging biophysical investigations and the unique properties of IDPs, the research aims to bridge the gap between the biological processes and their computational analogs, proposing novel methods, such as chemical AI implemented in liquid solutions as promising avenues for future advancements.
期刊介绍:
Biophysical Reviews aims to publish critical and timely reviews from key figures in the field of biophysics. The bulk of the reviews that are currently published are from invited authors, but the journal is also open for non-solicited reviews. Interested authors are encouraged to discuss the possibility of contributing a review with the Editor-in-Chief prior to submission. Through publishing reviews on biophysics, the editors of the journal hope to illustrate the great power and potential of physical techniques in the biological sciences, they aim to stimulate the discussion and promote further research and would like to educate and enthuse basic researcher scientists and students of biophysics. Biophysical Reviews covers the entire field of biophysics, generally defined as the science of describing and defining biological phenomenon using the concepts and the techniques of physics. This includes but is not limited by such areas as: - Bioinformatics - Biophysical methods and instrumentation - Medical biophysics - Biosystems - Cell biophysics and organization - Macromolecules: dynamics, structures and interactions - Single molecule biophysics - Membrane biophysics, channels and transportation