Júlia Crespin , Morane Clavel-Henry , Miquel Canals , Kristen M. Thyng , Veronica Ruiz-Xomchuk , Jordi Solé
{"title":"离线Fennel模型在地中海生物地球化学模拟中的有效性","authors":"Júlia Crespin , Morane Clavel-Henry , Miquel Canals , Kristen M. Thyng , Veronica Ruiz-Xomchuk , Jordi Solé","doi":"10.1016/j.ocemod.2025.102596","DOIUrl":null,"url":null,"abstract":"<div><div>Modeling the distribution of biogeochemical components in the ocean is essential for further understanding climate change impacts and assess the functioning of marine ecosystems. This requires robust and efficient physical-biological simulations of coupled ocean-ecosystem models, which are often hindered by limited data availability and computational resources. The option of running biological tracer fields offline, independently from the physical ocean simulation, is appealing due to increased computational efficiency. Here, we present an assessment and implementation of an offline biogeochemical model — the Offline Fennel model — within the Regional Ocean Modeling System (ROMS). Our methodology employs ROMS hydrodynamic outputs to run the biogeochemical model offline. This work also includes the first ground-truthing exercise of the referred offline biogeochemical model. We use a variety of skill metrics to compare the simulated surface chlorophyll to an ocean color dataset (Copernicus Marine Service Mediterranean Ocean Color) and BGC-Argo floats for the 2015–2020 period. The model is able to reproduce the temporal and spatial structures of the main chlorophyll fluctuation patterns in the study area, the Northwestern Mediterranean Sea. This area is of particular interest as it is one of the most productive regions in the entire Mediterranean Basin, with open-ocean upwellings and deep winter convection events occurring seasonally. The typical behavior of the region is likewise effectively represented in the implementation, including offshore primary production, nutrient supplies from the Rhone and Ebro rivers, and mesoscale hydrographic structures. This study provides a baseline for ROMS users in need of executing more biogeochemical simulations independently from more computationally demanding physical simulations.</div></div>","PeriodicalId":19457,"journal":{"name":"Ocean Modelling","volume":"198 ","pages":"Article 102596"},"PeriodicalIF":2.9000,"publicationDate":"2025-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Effectiveness of the Offline Fennel model for biogeochemical simulations in the Mediterranean Sea\",\"authors\":\"Júlia Crespin , Morane Clavel-Henry , Miquel Canals , Kristen M. Thyng , Veronica Ruiz-Xomchuk , Jordi Solé\",\"doi\":\"10.1016/j.ocemod.2025.102596\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Modeling the distribution of biogeochemical components in the ocean is essential for further understanding climate change impacts and assess the functioning of marine ecosystems. This requires robust and efficient physical-biological simulations of coupled ocean-ecosystem models, which are often hindered by limited data availability and computational resources. The option of running biological tracer fields offline, independently from the physical ocean simulation, is appealing due to increased computational efficiency. Here, we present an assessment and implementation of an offline biogeochemical model — the Offline Fennel model — within the Regional Ocean Modeling System (ROMS). Our methodology employs ROMS hydrodynamic outputs to run the biogeochemical model offline. This work also includes the first ground-truthing exercise of the referred offline biogeochemical model. We use a variety of skill metrics to compare the simulated surface chlorophyll to an ocean color dataset (Copernicus Marine Service Mediterranean Ocean Color) and BGC-Argo floats for the 2015–2020 period. The model is able to reproduce the temporal and spatial structures of the main chlorophyll fluctuation patterns in the study area, the Northwestern Mediterranean Sea. This area is of particular interest as it is one of the most productive regions in the entire Mediterranean Basin, with open-ocean upwellings and deep winter convection events occurring seasonally. The typical behavior of the region is likewise effectively represented in the implementation, including offshore primary production, nutrient supplies from the Rhone and Ebro rivers, and mesoscale hydrographic structures. This study provides a baseline for ROMS users in need of executing more biogeochemical simulations independently from more computationally demanding physical simulations.</div></div>\",\"PeriodicalId\":19457,\"journal\":{\"name\":\"Ocean Modelling\",\"volume\":\"198 \",\"pages\":\"Article 102596\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2025-07-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Ocean Modelling\",\"FirstCategoryId\":\"89\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S146350032500099X\",\"RegionNum\":3,\"RegionCategory\":\"地球科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"METEOROLOGY & ATMOSPHERIC SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ocean Modelling","FirstCategoryId":"89","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S146350032500099X","RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"METEOROLOGY & ATMOSPHERIC SCIENCES","Score":null,"Total":0}
Effectiveness of the Offline Fennel model for biogeochemical simulations in the Mediterranean Sea
Modeling the distribution of biogeochemical components in the ocean is essential for further understanding climate change impacts and assess the functioning of marine ecosystems. This requires robust and efficient physical-biological simulations of coupled ocean-ecosystem models, which are often hindered by limited data availability and computational resources. The option of running biological tracer fields offline, independently from the physical ocean simulation, is appealing due to increased computational efficiency. Here, we present an assessment and implementation of an offline biogeochemical model — the Offline Fennel model — within the Regional Ocean Modeling System (ROMS). Our methodology employs ROMS hydrodynamic outputs to run the biogeochemical model offline. This work also includes the first ground-truthing exercise of the referred offline biogeochemical model. We use a variety of skill metrics to compare the simulated surface chlorophyll to an ocean color dataset (Copernicus Marine Service Mediterranean Ocean Color) and BGC-Argo floats for the 2015–2020 period. The model is able to reproduce the temporal and spatial structures of the main chlorophyll fluctuation patterns in the study area, the Northwestern Mediterranean Sea. This area is of particular interest as it is one of the most productive regions in the entire Mediterranean Basin, with open-ocean upwellings and deep winter convection events occurring seasonally. The typical behavior of the region is likewise effectively represented in the implementation, including offshore primary production, nutrient supplies from the Rhone and Ebro rivers, and mesoscale hydrographic structures. This study provides a baseline for ROMS users in need of executing more biogeochemical simulations independently from more computationally demanding physical simulations.
期刊介绍:
The main objective of Ocean Modelling is to provide rapid communication between those interested in ocean modelling, whether through direct observation, or through analytical, numerical or laboratory models, and including interactions between physical and biogeochemical or biological phenomena. Because of the intimate links between ocean and atmosphere, involvement of scientists interested in influences of either medium on the other is welcome. The journal has a wide scope and includes ocean-atmosphere interaction in various forms as well as pure ocean results. In addition to primary peer-reviewed papers, the journal provides review papers, preliminary communications, and discussions.