人群队列验证的pm2.5诱导基因签名:个体暴露预测的机器学习方法。

IF 4.1 3区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES
Toxics Pub Date : 2025-06-30 DOI:10.3390/toxics13070562
Yu-Chung Wei, Wen-Chi Cheng, Pinpin Lin, Zhi-Yao Zhang, Chi-Hsien Chen, Chih-Da Wu, Yue Leon Guo, Hung-Jung Wang
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引用次数: 0

摘要

转录组学分析表明,暴露于PM2.5(一种常见的空气污染物)可以调节基因表达,而基因表达与负面健康影响和疾病有关。然而,关于PM2.5暴露与特定基因集表达之间关系的基于人群的队列研究很少。在这项研究中,我们使用无偏倚转录组分析方法来检测暴露于PM2.5的小鼠模型中的基因表达,并鉴定PM2.5应答基因。基因表达在人类细胞系和基于人群的队列研究中得到进一步验证。从PM2.5水平不同的地区招募了两组健康老年人(年龄≥65岁)。然后利用逻辑回归和决策树算法构建基于这些基因表达谱的PM2.5暴露预测模型。我们的研究结果表明,在基于细胞的分析和基于人群的队列研究中,五个基因(FAM102B、PPP2R1B、OXR1、ITGAM和PRP38B)的表达随着PM2.5暴露而增加。此外,预测模型在区分PM2.5的高低暴露方面显示出很高的准确性,可能支持将基因生物标志物整合到公共卫生实践中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Population Cohort-Validated PM2.5-Induced Gene Signatures: A Machine Learning Approach to Individual Exposure Prediction.

Transcriptomic profiling has shown that exposure to PM2.5, a common air pollutant, can modulate gene expression, which has been linked to negative health effects and diseases. However, there are few population-based cohort studies on the association between PM2.5 exposure and specific gene set expression. In this study, we used an unbiased transcriptomic profiling approach to examine gene expression in a mouse model exposed to PM2.5 and to identify PM2.5-responsive genes. The gene expressions were further validated in both the human cell lines and a population-based cohort study. Two cohorts of healthy older adults (aged ≥ 65 years) were recruited from regions characterized by differing levels of PM2.5. Logistic regression and decision tree algorithms were then utilized to construct predictive models for PM2.5 exposure based on these gene expression profiles. Our results indicated that the expression of five genes (FAM102B, PPP2R1B, OXR1, ITGAM, and PRP38B) increased with PM2.5 exposure in both cell-based assay and population-based cohort studies. Furthermore, the predictive models demonstrated high accuracy in classifying high-and-low PM2.5 exposure, potentially supporting the integration of gene biomarkers into public health practices.

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来源期刊
Toxics
Toxics Chemical Engineering-Chemical Health and Safety
CiteScore
4.50
自引率
10.90%
发文量
681
审稿时长
6 weeks
期刊介绍: Toxics (ISSN 2305-6304) is an international, peer-reviewed, open access journal which provides an advanced forum for studies related to all aspects of toxic chemicals and materials. It publishes reviews, regular research papers, and short communications. Our aim is to encourage scientists to publish their experimental and theoretical results in detail. There is, therefore, no restriction on the maximum length of the papers, although authors should write their papers in a clear and concise way. The full experimental details must be provided so that the results can be reproduced. Electronic files or software regarding the full details of calculations and experimental procedure can be deposited as supplementary material, if it is not possible to publish them along with the text.
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