Yu-Chung Wei, Wen-Chi Cheng, Pinpin Lin, Zhi-Yao Zhang, Chi-Hsien Chen, Chih-Da Wu, Yue Leon Guo, Hung-Jung Wang
{"title":"人群队列验证的pm2.5诱导基因签名:个体暴露预测的机器学习方法。","authors":"Yu-Chung Wei, Wen-Chi Cheng, Pinpin Lin, Zhi-Yao Zhang, Chi-Hsien Chen, Chih-Da Wu, Yue Leon Guo, Hung-Jung Wang","doi":"10.3390/toxics13070562","DOIUrl":null,"url":null,"abstract":"<p><p>Transcriptomic profiling has shown that exposure to PM<sub>2.5</sub>, a common air pollutant, can modulate gene expression, which has been linked to negative health effects and diseases. However, there are few population-based cohort studies on the association between PM<sub>2.5</sub> exposure and specific gene set expression. In this study, we used an unbiased transcriptomic profiling approach to examine gene expression in a mouse model exposed to PM<sub>2.5</sub> and to identify PM<sub>2.5</sub>-responsive genes. The gene expressions were further validated in both the human cell lines and a population-based cohort study. Two cohorts of healthy older adults (aged ≥ 65 years) were recruited from regions characterized by differing levels of PM<sub>2.5</sub>. Logistic regression and decision tree algorithms were then utilized to construct predictive models for PM<sub>2.5</sub> exposure based on these gene expression profiles. Our results indicated that the expression of five genes (<i>FAM102B</i>, <i>PPP2R1B</i>, <i>OXR1</i>, <i>ITGAM</i>, and <i>PRP38B)</i> increased with PM<sub>2.5</sub> exposure in both cell-based assay and population-based cohort studies. Furthermore, the predictive models demonstrated high accuracy in classifying high-and-low PM<sub>2.5</sub> exposure, potentially supporting the integration of gene biomarkers into public health practices.</p>","PeriodicalId":23195,"journal":{"name":"Toxics","volume":"13 7","pages":""},"PeriodicalIF":4.1000,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12300151/pdf/","citationCount":"0","resultStr":"{\"title\":\"Population Cohort-Validated PM<sub>2.5</sub>-Induced Gene Signatures: A Machine Learning Approach to Individual Exposure Prediction.\",\"authors\":\"Yu-Chung Wei, Wen-Chi Cheng, Pinpin Lin, Zhi-Yao Zhang, Chi-Hsien Chen, Chih-Da Wu, Yue Leon Guo, Hung-Jung Wang\",\"doi\":\"10.3390/toxics13070562\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Transcriptomic profiling has shown that exposure to PM<sub>2.5</sub>, a common air pollutant, can modulate gene expression, which has been linked to negative health effects and diseases. However, there are few population-based cohort studies on the association between PM<sub>2.5</sub> exposure and specific gene set expression. In this study, we used an unbiased transcriptomic profiling approach to examine gene expression in a mouse model exposed to PM<sub>2.5</sub> and to identify PM<sub>2.5</sub>-responsive genes. The gene expressions were further validated in both the human cell lines and a population-based cohort study. Two cohorts of healthy older adults (aged ≥ 65 years) were recruited from regions characterized by differing levels of PM<sub>2.5</sub>. Logistic regression and decision tree algorithms were then utilized to construct predictive models for PM<sub>2.5</sub> exposure based on these gene expression profiles. Our results indicated that the expression of five genes (<i>FAM102B</i>, <i>PPP2R1B</i>, <i>OXR1</i>, <i>ITGAM</i>, and <i>PRP38B)</i> increased with PM<sub>2.5</sub> exposure in both cell-based assay and population-based cohort studies. Furthermore, the predictive models demonstrated high accuracy in classifying high-and-low PM<sub>2.5</sub> exposure, potentially supporting the integration of gene biomarkers into public health practices.</p>\",\"PeriodicalId\":23195,\"journal\":{\"name\":\"Toxics\",\"volume\":\"13 7\",\"pages\":\"\"},\"PeriodicalIF\":4.1000,\"publicationDate\":\"2025-06-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12300151/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Toxics\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://doi.org/10.3390/toxics13070562\",\"RegionNum\":3,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Toxics","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.3390/toxics13070562","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
Population Cohort-Validated PM2.5-Induced Gene Signatures: A Machine Learning Approach to Individual Exposure Prediction.
Transcriptomic profiling has shown that exposure to PM2.5, a common air pollutant, can modulate gene expression, which has been linked to negative health effects and diseases. However, there are few population-based cohort studies on the association between PM2.5 exposure and specific gene set expression. In this study, we used an unbiased transcriptomic profiling approach to examine gene expression in a mouse model exposed to PM2.5 and to identify PM2.5-responsive genes. The gene expressions were further validated in both the human cell lines and a population-based cohort study. Two cohorts of healthy older adults (aged ≥ 65 years) were recruited from regions characterized by differing levels of PM2.5. Logistic regression and decision tree algorithms were then utilized to construct predictive models for PM2.5 exposure based on these gene expression profiles. Our results indicated that the expression of five genes (FAM102B, PPP2R1B, OXR1, ITGAM, and PRP38B) increased with PM2.5 exposure in both cell-based assay and population-based cohort studies. Furthermore, the predictive models demonstrated high accuracy in classifying high-and-low PM2.5 exposure, potentially supporting the integration of gene biomarkers into public health practices.
ToxicsChemical Engineering-Chemical Health and Safety
CiteScore
4.50
自引率
10.90%
发文量
681
审稿时长
6 weeks
期刊介绍:
Toxics (ISSN 2305-6304) is an international, peer-reviewed, open access journal which provides an advanced forum for studies related to all aspects of toxic chemicals and materials. It publishes reviews, regular research papers, and short communications. Our aim is to encourage scientists to publish their experimental and theoretical results in detail. There is, therefore, no restriction on the maximum length of the papers, although authors should write their papers in a clear and concise way. The full experimental details must be provided so that the results can be reproduced. Electronic files or software regarding the full details of calculations and experimental procedure can be deposited as supplementary material, if it is not possible to publish them along with the text.