单链DNA分子在溶液中的过度极化:可极化连续体模型中的线性响应理论及其在生物传感中的应用。

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL
Roberto Cammi
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引用次数: 0

摘要

分子溶质的超极化率描述了分子溶质与使溶质本身极化的宏观光场之间的相互作用能,与涉及溶剂分子的相同相互作用过程相比。窃窃廊模式(WGM)是一种用于检测生物分子的生物传感技术,其信号的物理机制与过度极化率有关。WGM信号的解释需要有关感兴趣的生物分子的过量极化率的信息,到目前为止,这些信息可以从溶液折射率的实验测量中获得。在这里,我们提出了一个量子化学理论,用于确定在极化连续体模型(PCM-eLRT)溶剂化的有效线性响应理论的超额极化率。作为概念验证,PCM-eLRT在电子结构方法的TD-DFT水平上应用于计算多达14聚寡核苷酸的单链DNA分子的过量极化率,显示出与现有实验数据的显著一致性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The Excess Polarizability of Single-Stranded DNA Molecules in Solution: A Linear Response Theory in the Polarizable Continuum Model with an Application to Biosensing.

The excess polarizability of a molecular solute describes the interaction energy between a molecular solute and a macroscopic optical field that polarizes the solute itself, as compared to the same interaction process involving solvent molecules. The excess polarizability is involved in the physical mechanism that triggers the signals in the whispering gallery mode (WGM), a biosensing technique (denoted as WGM) for detecting biomolecules. The interpretation of the WGM signals requires information on the excess polarizability of the biomolecule of interest, which, until now, could be obtained from experimental measurements of the refractive index of solutions. Here, we present a quantum chemical theory for determining the excess polarizability using the effective linear response theory in the polarizable continuum model (PCM-eLRT) for solvation. As a proof-of-concept, the PCM-eLRT is applied at the TD-DFT level of electronic structure methodology to the calculation of the excess polarizability of single-stranded DNA molecules constituted up to 14-mer oligonucleotides, showing remarkable agreement with available experimental data.

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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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