粉红色火山藤壶的参考基因组组装,Rubescens, Nilsson-Cantell, 1931。

IF 2.5 2区 生物学 Q2 EVOLUTIONARY BIOLOGY
Bailey J Carlson, Melissa B DeBiasse, Carmen Del R Pedraza-Marrón, Merly Escalona, Noravit Chumchim, Mohan P A Marimuthu, Courtney Miller, Oanh Nguyen, William E Seligmann, Michael N Dawson
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引用次数: 0

摘要

在最近的气候变化中,粉红色的火山藤壶(Tetraclita rubescens)沿着东太平洋海岸线向极地地区扩张,这可能是由于大量种群的高基因流动和高遗传多样性所促进的。高质量的参考基因组为更详细地研究这些模式提供了下一步。我们提出了一个高度连续的,染色体水平的基因组组装的T. rubescens使用长读测序和短读接近连接数据。该基因组总装量为2.44 Gb,在节肢动物已知基因表中包含92.5%的同源基因完整度,是其他高质量藤壶基因组中N50最大的(~107 Mb), L50评分最低(10个支架)。利用这种染色体水平的组装,我们将能够更好地对比漂移、迁移和选择在种群和空间扩张动力学中的作用,范围内的扩散和适应的作用,并研究物种的基因组多样性,包括转座因子在基因组中的作用。T. rubescens是加利福尼亚中部和南部岩石潮间带海岸的标志性藤壶,了解其动态可以帮助了解和支持东北太平洋海岸线潮间带群落的保护。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Reference Genome Assembly for the Pink Volcano Barnacle, Tetraclita Rubescens, Nilsson-Cantell, 1931.

The pink volcano barnacle, Tetraclita rubescens, has experienced a poleward range expansion along the eastern Pacific coastline amidst recent climate changes, likely facilitated by high gene flow and high genetic diversity in a large population. A high-quality reference genome provides the next step to investigate these patterns in more detail. We present a highly contiguous, chromosome-level genome assembly for T. rubescens using long-read sequencing and short-read proximity ligation data. The genome assembly is 2.44 Gb, contains 92.5% complete ortholog genes based on the known Arthropoda gene list, the largest N50 compared to other high-quality barnacle genomes (~107 Mb), and a low L50 score (10 scaffolds). With this chromosome-level assembly, we will be better able to contrast the roles of drift, migration, and selection in population and spatial expansion dynamics, the roles of dispersal and adaptation within the range, and to investigate the genomic diversity of the species, including the roles of transposable elements in the genome. T. rubescens is an iconic barnacle on central and southern Californian rocky intertidal shores, and understanding its dynamics can help inform and support the conservation of intertidal communities along the northeastern Pacific coastline.

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来源期刊
Journal of Heredity
Journal of Heredity 生物-遗传学
CiteScore
5.20
自引率
6.50%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Over the last 100 years, the Journal of Heredity has established and maintained a tradition of scholarly excellence in the publication of genetics research. Virtually every major figure in the field has contributed to the journal. Established in 1903, Journal of Heredity covers organismal genetics across a wide range of disciplines and taxa. Articles include such rapidly advancing fields as conservation genetics of endangered species, population structure and phylogeography, molecular evolution and speciation, molecular genetics of disease resistance in plants and animals, genetic biodiversity and relevant computer programs.
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