洞察COVID-19与翼状胬肉之间的共同致病联系:具有实验验证的系统生物信息学分析。

IF 2.5 3区 生物学
Tianyi Zhou, Xueyao Cai, Wenjun Shi, Xia Ding, Yuchen Cai
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引用次数: 0

摘要

在过去几年中,2019年冠状病毒病(COVID-19)的爆发对全球公共卫生造成了巨大威胁。尽管对COVID-19的大量研究正在进行中,但很少有人关注病毒对眼表的影响。翼状胬肉是眼表最常见的炎症性疾病之一,多种环境暴露可诱发翼状胬肉。在目前的工作中,我们旨在研究翼状胬肉与COVID-19之间潜在的相互作用。基于生物信息学工具,我们比较了COVID-19和翼状胬肉的数据库,并筛选了共同差异表达基因(DEGs)。分析了常见deg的多因子调控网络和共表达网络。体外实验,包括使用人结膜成纤维细胞(HConFs)敲除siRNA,证实了生物信息学结果。基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析表明,免疫反应与covid -19诱导的眼部事件相关。然后我们鉴定出5个常见的DEGs,包括ERP27、SYTL5、STXBP6、EXTL1和DIO2,并通过体外实验进一步验证。通过蛋白相互作用(PPI)网络进一步提取SYTL5、STXBP6和ERP27三个枢纽基因。此外,我们还发现了一个由8个转录因子(STAT6B、GATA1、POU2F2、PGR、RBPJ、STAT3、CRTC1和HMGA1)和1个microRNA (hsa-miR-384)组成的调控网络。总的来说,我们研究了SARS-CoV-2与翼状胬肉在眼表基因谱调节中的共同联系。我们的研究对COVID-19与翼状胬肉的共同致病机制提出了新的见解,这些机制与免疫失调和病理性增殖有关,表明病毒对翼状胬肉易感性的影响。这种创新的观点可能使更全面的理解和进步,以改善临床预防和治疗。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Insight into the shared pathogenic link between COVID-19 and pterygium: a systematic bioinformatics analysis with experimental validation.

The outbreak of coronavirus disease 2019 (COVID-19) has resulted in a remarkable threat to global public health over the past few years. Despite the tremendous studies of COVID-19 ongoing, few have focused on the viral impact on the ocular surface. As one of the most common inflammatory diseases of the ocular surface, pterygium could be triggered under multiple environmental exposures. In the present work, we aimed at investigating the potential interactions between pterygium and COVID-19. Based on bioinformatic tools, we compared databases of COVID-19 and pterygium and screened for common differentially expressed genes (DEGs). Multifactor regulatory network and co-expression network of the common DEGs were analyzed. In vitro experiments, including siRNA knockdown using human conjunctival fibroblasts (HConFs) confirmed the bioinformatics results. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis implied that immune response was associated with COVID-19-induced ocular events. We then identified five common DEGs, including ERP27, SYTL5, STXBP6, EXTL1 and DIO2, which was further validated by in vitro experiments. Three hub genes were further extracted which included SYTL5, STXBP6 and ERP27 through protein-protein interactions (PPI) network. Furthermore, we illustrated a regulatory network consisting of eight transcription factors (STAT6B, GATA1, POU2F2, PGR, RBPJ, STAT3, CRTC1 and HMGA1) and one microRNA (hsa-miR-384). Overall, we investigated the common link between SARS-CoV-2 and pterygium in the modulation of gene profiles on the ocular surface. Our study proposed a novel insight into the common pathogenic mechanisms between COVID-19 and pterygium, which are associated with immune dysregulation and pathological proliferation, indicating a viral impact on pterygium susceptibility. This innovative perspective may enable a more comprehensive understanding and advance towards improved clinical prevention and treatment.

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来源期刊
Hereditas
Hereditas Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.80
自引率
3.70%
发文量
0
期刊介绍: For almost a century, Hereditas has published original cutting-edge research and reviews. As the Official journal of the Mendelian Society of Lund, the journal welcomes research from across all areas of genetics and genomics. Topics of interest include human and medical genetics, animal and plant genetics, microbial genetics, agriculture and bioinformatics.
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