Jianxiang Liang , Linying Zhou , Xin Hu , Jiang Lu , Wenjia Wang , Qiang Zhu
{"title":"马竹(Dendrocalamus latiflorus Munro) DREB基因的功能和表达分析揭示了DREB基因在非生物胁迫适应中的作用","authors":"Jianxiang Liang , Linying Zhou , Xin Hu , Jiang Lu , Wenjia Wang , Qiang Zhu","doi":"10.1016/j.plaphy.2025.110203","DOIUrl":null,"url":null,"abstract":"<div><div>Ma bamboo (<em>Dendrocalamus latiflorus</em> Munro) is a key giant bamboo in South Asia, highly sensitive to abiotic stresses. Dehydration-Responsive Element-Binding (DREB) transcription factors (TFs) are an important gene family involved in plant growth, metabolic regulation, and environmental responses. Although the roles of DREB TFs in plant growth, metabolic regulation, and environmental responses are well studied, little is known in Ma bamboo. To address this gap, we systematically identified and functuonally predicted <em>DREB</em> genes in Ma bamboo, with emphasis on their potential involvement in stress response mechanisms. Through genome-wide analysis, 42 <em>DlDREBs</em> distributed across 6 subfamilies were identified. Integrative analyses encompassin <em>cis</em>-element, chromosomal localization, phylogenetic relationships, protein-protein interaction (PPI) network, and gene ontology (GO) annotations revealed their putative roles in developmental processes, metabolic modulation, and stress adaptation. RT-qPCR profiling demonstrated that eight <em>DlDREBs</em> exhibit distinct and stress-specific expression patterns under cold, salt, and drought treatments, underscoring their pivotal contributions to abiotic stress resilience. Three candidate genes (<em>DREB9-A</em>, <em>DREB10-B</em>, and <em>DREB12-C</em>) were prioritized for functional validation. Subsequent cloning, sequence characterization, subcellular localization analysis, and DNA binding assays confirmed their regulatory potential. Notably, DREB10-B, and DREB12-C were found to directly bind the promoter of <em>GA2ox7</em>, a key gene implicated in abiotic stress signaling, suggesting their mechanistic role in stress-responsive pathways. Furthermore, transient transformation assays in tobacco and yeast transformation experiments demonstrated that overexpression of <em>DREB10-B</em> and <em>DREB12-C</em> may enhance plant stress tolerance. In summary, this study provides a theoretical basis for clarifying the molecular mechanism of the abiotic stress responses of the <em>DREB</em> gene family in Ma bamboo.</div></div>","PeriodicalId":20234,"journal":{"name":"Plant Physiology and Biochemistry","volume":"228 ","pages":"Article 110203"},"PeriodicalIF":5.7000,"publicationDate":"2025-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Functional and expression profiling of DREB genes in Ma Bamboo (Dendrocalamus latiflorus Munro) reveals their role in abiotic stress adaptation\",\"authors\":\"Jianxiang Liang , Linying Zhou , Xin Hu , Jiang Lu , Wenjia Wang , Qiang Zhu\",\"doi\":\"10.1016/j.plaphy.2025.110203\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Ma bamboo (<em>Dendrocalamus latiflorus</em> Munro) is a key giant bamboo in South Asia, highly sensitive to abiotic stresses. Dehydration-Responsive Element-Binding (DREB) transcription factors (TFs) are an important gene family involved in plant growth, metabolic regulation, and environmental responses. Although the roles of DREB TFs in plant growth, metabolic regulation, and environmental responses are well studied, little is known in Ma bamboo. To address this gap, we systematically identified and functuonally predicted <em>DREB</em> genes in Ma bamboo, with emphasis on their potential involvement in stress response mechanisms. Through genome-wide analysis, 42 <em>DlDREBs</em> distributed across 6 subfamilies were identified. Integrative analyses encompassin <em>cis</em>-element, chromosomal localization, phylogenetic relationships, protein-protein interaction (PPI) network, and gene ontology (GO) annotations revealed their putative roles in developmental processes, metabolic modulation, and stress adaptation. RT-qPCR profiling demonstrated that eight <em>DlDREBs</em> exhibit distinct and stress-specific expression patterns under cold, salt, and drought treatments, underscoring their pivotal contributions to abiotic stress resilience. Three candidate genes (<em>DREB9-A</em>, <em>DREB10-B</em>, and <em>DREB12-C</em>) were prioritized for functional validation. Subsequent cloning, sequence characterization, subcellular localization analysis, and DNA binding assays confirmed their regulatory potential. Notably, DREB10-B, and DREB12-C were found to directly bind the promoter of <em>GA2ox7</em>, a key gene implicated in abiotic stress signaling, suggesting their mechanistic role in stress-responsive pathways. Furthermore, transient transformation assays in tobacco and yeast transformation experiments demonstrated that overexpression of <em>DREB10-B</em> and <em>DREB12-C</em> may enhance plant stress tolerance. In summary, this study provides a theoretical basis for clarifying the molecular mechanism of the abiotic stress responses of the <em>DREB</em> gene family in Ma bamboo.</div></div>\",\"PeriodicalId\":20234,\"journal\":{\"name\":\"Plant Physiology and Biochemistry\",\"volume\":\"228 \",\"pages\":\"Article 110203\"},\"PeriodicalIF\":5.7000,\"publicationDate\":\"2025-07-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Physiology and Biochemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0981942825007314\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Physiology and Biochemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0981942825007314","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
Functional and expression profiling of DREB genes in Ma Bamboo (Dendrocalamus latiflorus Munro) reveals their role in abiotic stress adaptation
Ma bamboo (Dendrocalamus latiflorus Munro) is a key giant bamboo in South Asia, highly sensitive to abiotic stresses. Dehydration-Responsive Element-Binding (DREB) transcription factors (TFs) are an important gene family involved in plant growth, metabolic regulation, and environmental responses. Although the roles of DREB TFs in plant growth, metabolic regulation, and environmental responses are well studied, little is known in Ma bamboo. To address this gap, we systematically identified and functuonally predicted DREB genes in Ma bamboo, with emphasis on their potential involvement in stress response mechanisms. Through genome-wide analysis, 42 DlDREBs distributed across 6 subfamilies were identified. Integrative analyses encompassin cis-element, chromosomal localization, phylogenetic relationships, protein-protein interaction (PPI) network, and gene ontology (GO) annotations revealed their putative roles in developmental processes, metabolic modulation, and stress adaptation. RT-qPCR profiling demonstrated that eight DlDREBs exhibit distinct and stress-specific expression patterns under cold, salt, and drought treatments, underscoring their pivotal contributions to abiotic stress resilience. Three candidate genes (DREB9-A, DREB10-B, and DREB12-C) were prioritized for functional validation. Subsequent cloning, sequence characterization, subcellular localization analysis, and DNA binding assays confirmed their regulatory potential. Notably, DREB10-B, and DREB12-C were found to directly bind the promoter of GA2ox7, a key gene implicated in abiotic stress signaling, suggesting their mechanistic role in stress-responsive pathways. Furthermore, transient transformation assays in tobacco and yeast transformation experiments demonstrated that overexpression of DREB10-B and DREB12-C may enhance plant stress tolerance. In summary, this study provides a theoretical basis for clarifying the molecular mechanism of the abiotic stress responses of the DREB gene family in Ma bamboo.
期刊介绍:
Plant Physiology and Biochemistry publishes original theoretical, experimental and technical contributions in the various fields of plant physiology (biochemistry, physiology, structure, genetics, plant-microbe interactions, etc.) at diverse levels of integration (molecular, subcellular, cellular, organ, whole plant, environmental). Opinions expressed in the journal are the sole responsibility of the authors and publication does not imply the editors'' agreement.
Manuscripts describing molecular-genetic and/or gene expression data that are not integrated with biochemical analysis and/or actual measurements of plant physiological processes are not suitable for PPB. Also "Omics" studies (transcriptomics, proteomics, metabolomics, etc.) reporting descriptive analysis without an element of functional validation assays, will not be considered. Similarly, applied agronomic or phytochemical studies that generate no new, fundamental insights in plant physiological and/or biochemical processes are not suitable for publication in PPB.
Plant Physiology and Biochemistry publishes several types of articles: Reviews, Papers and Short Papers. Articles for Reviews are either invited by the editor or proposed by the authors for the editor''s prior agreement. Reviews should not exceed 40 typewritten pages and Short Papers no more than approximately 8 typewritten pages. The fundamental character of Plant Physiology and Biochemistry remains that of a journal for original results.