Yang Li, Jizhong Ma, Yeping Wang, Weibin Zhan, Qian Wang
{"title":"烧伤患者的转录组学分析揭示了关键的乳酸化相关基因及其分子机制。","authors":"Yang Li, Jizhong Ma, Yeping Wang, Weibin Zhan, Qian Wang","doi":"10.3389/fmed.2025.1554791","DOIUrl":null,"url":null,"abstract":"<p><strong>Introduction: </strong>Burn injury is a global health concern characterized by complex pathophysiological changes. Understanding gene expression changes and molecular pathways, especially those related to lactylation, is crucial for developing effective treatments. This study aimed to analyze the transcriptomic profiles of burn patients and identify lactylation-related genes as potential biomarkers or therapeutic targets.</p><p><strong>Methods: </strong>Peripheral blood transcriptome data of burn patients and controls were obtained from the GEO database. After preprocessing to remove batch effects and normalize the data, differential genes were screened. Functional enrichment, lactylation gene analysis, machine learning for key gene selection, immune cell infiltration analysis, gene correlation and GSEA analysis, patient clustering, and upstream regulatory factor prediction were performed using various R packages. Statistical analysis was conducted using R software, with a <i>p</i>-value of < 0.05 considered significant.</p><p><strong>Results: </strong>Pathway enrichment analysis in burn patients showed significant alterations in immune-related pathways. Lactylation genes were differentially expressed, with changes in RNA processing and cell interactions. Machine learning identified four key lactylation-related molecules (RPL14, SET, ENO1, and PPP1CC). Immune microenvironment analysis revealed correlations with immune cell infiltration. Clustering analysis based on these four molecules divided burn patients into two subgroups, each exhibiting distinct gene expression patterns and pathway enrichments.</p><p><strong>Conclusion: </strong>This study provides insights into the molecular alterations in burn patients, especially regarding lactylation. The identified key molecules and pathways offer potential targets for personalized treatment. Future research should validate these findings and explore their clinical applications for improving burn patient management and prognosis.</p>","PeriodicalId":12488,"journal":{"name":"Frontiers in Medicine","volume":"12 ","pages":"1554791"},"PeriodicalIF":3.1000,"publicationDate":"2025-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12245797/pdf/","citationCount":"0","resultStr":"{\"title\":\"Transcriptomic profiling of burn patients reveals key lactylation-related genes and their molecular mechanisms.\",\"authors\":\"Yang Li, Jizhong Ma, Yeping Wang, Weibin Zhan, Qian Wang\",\"doi\":\"10.3389/fmed.2025.1554791\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Introduction: </strong>Burn injury is a global health concern characterized by complex pathophysiological changes. Understanding gene expression changes and molecular pathways, especially those related to lactylation, is crucial for developing effective treatments. This study aimed to analyze the transcriptomic profiles of burn patients and identify lactylation-related genes as potential biomarkers or therapeutic targets.</p><p><strong>Methods: </strong>Peripheral blood transcriptome data of burn patients and controls were obtained from the GEO database. After preprocessing to remove batch effects and normalize the data, differential genes were screened. Functional enrichment, lactylation gene analysis, machine learning for key gene selection, immune cell infiltration analysis, gene correlation and GSEA analysis, patient clustering, and upstream regulatory factor prediction were performed using various R packages. Statistical analysis was conducted using R software, with a <i>p</i>-value of < 0.05 considered significant.</p><p><strong>Results: </strong>Pathway enrichment analysis in burn patients showed significant alterations in immune-related pathways. Lactylation genes were differentially expressed, with changes in RNA processing and cell interactions. Machine learning identified four key lactylation-related molecules (RPL14, SET, ENO1, and PPP1CC). Immune microenvironment analysis revealed correlations with immune cell infiltration. Clustering analysis based on these four molecules divided burn patients into two subgroups, each exhibiting distinct gene expression patterns and pathway enrichments.</p><p><strong>Conclusion: </strong>This study provides insights into the molecular alterations in burn patients, especially regarding lactylation. The identified key molecules and pathways offer potential targets for personalized treatment. Future research should validate these findings and explore their clinical applications for improving burn patient management and prognosis.</p>\",\"PeriodicalId\":12488,\"journal\":{\"name\":\"Frontiers in Medicine\",\"volume\":\"12 \",\"pages\":\"1554791\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-06-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12245797/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Frontiers in Medicine\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.3389/fmed.2025.1554791\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"MEDICINE, GENERAL & INTERNAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Medicine","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.3389/fmed.2025.1554791","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"MEDICINE, GENERAL & INTERNAL","Score":null,"Total":0}
Transcriptomic profiling of burn patients reveals key lactylation-related genes and their molecular mechanisms.
Introduction: Burn injury is a global health concern characterized by complex pathophysiological changes. Understanding gene expression changes and molecular pathways, especially those related to lactylation, is crucial for developing effective treatments. This study aimed to analyze the transcriptomic profiles of burn patients and identify lactylation-related genes as potential biomarkers or therapeutic targets.
Methods: Peripheral blood transcriptome data of burn patients and controls were obtained from the GEO database. After preprocessing to remove batch effects and normalize the data, differential genes were screened. Functional enrichment, lactylation gene analysis, machine learning for key gene selection, immune cell infiltration analysis, gene correlation and GSEA analysis, patient clustering, and upstream regulatory factor prediction were performed using various R packages. Statistical analysis was conducted using R software, with a p-value of < 0.05 considered significant.
Results: Pathway enrichment analysis in burn patients showed significant alterations in immune-related pathways. Lactylation genes were differentially expressed, with changes in RNA processing and cell interactions. Machine learning identified four key lactylation-related molecules (RPL14, SET, ENO1, and PPP1CC). Immune microenvironment analysis revealed correlations with immune cell infiltration. Clustering analysis based on these four molecules divided burn patients into two subgroups, each exhibiting distinct gene expression patterns and pathway enrichments.
Conclusion: This study provides insights into the molecular alterations in burn patients, especially regarding lactylation. The identified key molecules and pathways offer potential targets for personalized treatment. Future research should validate these findings and explore their clinical applications for improving burn patient management and prognosis.
期刊介绍:
Frontiers in Medicine publishes rigorously peer-reviewed research linking basic research to clinical practice and patient care, as well as translating scientific advances into new therapies and diagnostic tools. Led by an outstanding Editorial Board of international experts, this multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics, clinicians and the public worldwide.
In addition to papers that provide a link between basic research and clinical practice, a particular emphasis is given to studies that are directly relevant to patient care. In this spirit, the journal publishes the latest research results and medical knowledge that facilitate the translation of scientific advances into new therapies or diagnostic tools. The full listing of the Specialty Sections represented by Frontiers in Medicine is as listed below. As well as the established medical disciplines, Frontiers in Medicine is launching new sections that together will facilitate
- the use of patient-reported outcomes under real world conditions
- the exploitation of big data and the use of novel information and communication tools in the assessment of new medicines
- the scientific bases for guidelines and decisions from regulatory authorities
- access to medicinal products and medical devices worldwide
- addressing the grand health challenges around the world