大豆GmPLATZ基因家族的全基因组鉴定及盐胁迫响应性表达分析

IF 4 2区 生物学 Q1 PLANT SCIENCES
Mingyu Wang, Zheyun Guan, Songquan Wu, Jingyong Zhang, Chunjing Lin, Yanyan Sun, Mingzhe Shen, Chunbao Zhang
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引用次数: 0

摘要

植物特异性的PLATZ转录因子在植物生长发育和对非生物胁迫的响应中起着至关重要的作用。然而,尽管具有重要的功能意义,PLATZ基因在大豆中的特征仍然很差。在这项研究中,我们对GmPLATZ基因家族进行了全基因组分析,并研究了它们在盐胁迫下的表达谱。在大豆基因组中共鉴定出29个GmPLATZ基因,并系统分析了它们的理化性质、保守结构域、进化关系、顺式作用元件和表达调控模式。亚细胞定位预测表明,除了GmPLATZ5和GmPLATZ14表现出叶绿体-核双定位外,大多数GmPLATZs都有核定位。基因家族扩展分析表明,21个片段重复事件是GmPLATZ多样化的主要驱动因素。系统发育分析将GmPLATZ基因分为四个亚组,而基因结构和基序分析揭示了保守的锌结合域,并确定了与光反应、激素信号传导和应激反应相关的多个顺式作用元件。表达谱显示了组织特异性表达模式,13个GmPLATZ基因在盐胁迫下差异表达,包括根优先成员(如GmPLATZ1, GmPLATZ10)和叶优先成员(如GmPLATZ8, GmPLATZ9)。该研究为进一步研究GmPLATZ基因在大豆发育和抗逆性中的功能提供了理论依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome-Wide Identification and Salt Stress-Responsive Expression Analysis of the GmPLATZ Gene Family in Soybean (Glycine max L.).

The plant-specific PLATZ transcription factors play crucial roles in plant growth, development, and responses to abiotic stresses. However, despite their functional significance, PLATZ genes remain poorly characterized in soybeans. In this study, we conducted a genome-wide analysis of the GmPLATZ gene family and investigated their expression profiles under salt stress. We identified a total of 29 GmPLATZ genes in the soybean genome and systematically analyzed their physicochemical properties, conserved domains, evolutionary relationships, cis-acting elements, and expression regulation patterns. Subcellular localization predictions indicated nuclear localization for most GmPLATZs, except for GmPLATZ5 and GmPLATZ14, which showed dual chloroplast-nuclear localization. A gene family expansion analysis indicated that 21 segmental duplication events were the primary driver of GmPLATZ diversification. A phylogenetic analysis classified the GmPLATZ genes into four subgroups, while gene structure and motif analyses revealed conserved zinc-binding domains and identified multiple cis-acting elements associated with light responsiveness, hormone signaling, and stress responses. Expression profiling showed tissue-specific expression patterns, with 13 GmPLATZ genes differentially expressed under salt stress, including root-preferential members (e.g., GmPLATZ1, GmPLATZ10) and leaf-preferential members (e.g., GmPLATZ8, GmPLATZ9). This study provides a theoretical basis for further investigation of GmPLATZ gene functions in soybean development and stress tolerance.

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来源期刊
Plants-Basel
Plants-Basel Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
6.50
自引率
11.10%
发文量
2923
审稿时长
15.4 days
期刊介绍: Plants (ISSN 2223-7747), is an international and multidisciplinary scientific open access journal that covers all key areas of plant science. It publishes review articles, regular research articles, communications, and short notes in the fields of structural, functional and experimental botany. In addition to fundamental disciplines such as morphology, systematics, physiology and ecology of plants, the journal welcomes all types of articles in the field of applied plant science.
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