{"title":"新一代嗜极微生物工程中盐弧菌高效本构表达系统的建立","authors":"Zheng-Jun Li, Nan Pu, Bin Wei, Hao Liang","doi":"10.1016/j.bej.2025.109863","DOIUrl":null,"url":null,"abstract":"<div><div>The halophilic bacterium <em>Salinivibrio</em> sp. TGB10 represents an emerging microbial chassis for industrial biotechnology, yet its genetic toolkit remains underdeveloped due to insufficient characterization of regulatory elements. Here, we identified and characterized a novel endogenous promoter (p1) through transcriptomic analysis and functional validation. The 185-bp promoter region, located upstream of a gene encoding a hypothetical protein containing leucine-zipper lipoprotein domain, was found to contain all essential regulatory elements including a functional −10 element, extended −10 motif, and −35 element. Through progressive truncation and ribosome binding site engineering, we precisely mapped these elements and revealed their compensatory interactions in transcription initiation. Next, we developed a series of synthetic promoters by randomizing the spacer region between −35 and −10 elements, achieving expression levels spanning four orders of magnitude in <em>Salinivibrio</em> and three orders in <em>Escherichia coli</em>. The practical utility of p1 promoter was demonstrated through efficient production of industrially relevant β-glucosidase, with optimized fermentation conditions yielding 76.83 U/mL activity. This study provides a critical genetic toolkit for metabolic engineering and synthetic biology applications in <em>Salinivibrio</em>.</div></div>","PeriodicalId":8766,"journal":{"name":"Biochemical Engineering Journal","volume":"223 ","pages":"Article 109863"},"PeriodicalIF":3.7000,"publicationDate":"2025-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Development of a high-efficiency constitutive expression system in Salinivibrio strain for next-generation extremophile engineering\",\"authors\":\"Zheng-Jun Li, Nan Pu, Bin Wei, Hao Liang\",\"doi\":\"10.1016/j.bej.2025.109863\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The halophilic bacterium <em>Salinivibrio</em> sp. TGB10 represents an emerging microbial chassis for industrial biotechnology, yet its genetic toolkit remains underdeveloped due to insufficient characterization of regulatory elements. Here, we identified and characterized a novel endogenous promoter (p1) through transcriptomic analysis and functional validation. The 185-bp promoter region, located upstream of a gene encoding a hypothetical protein containing leucine-zipper lipoprotein domain, was found to contain all essential regulatory elements including a functional −10 element, extended −10 motif, and −35 element. Through progressive truncation and ribosome binding site engineering, we precisely mapped these elements and revealed their compensatory interactions in transcription initiation. Next, we developed a series of synthetic promoters by randomizing the spacer region between −35 and −10 elements, achieving expression levels spanning four orders of magnitude in <em>Salinivibrio</em> and three orders in <em>Escherichia coli</em>. The practical utility of p1 promoter was demonstrated through efficient production of industrially relevant β-glucosidase, with optimized fermentation conditions yielding 76.83 U/mL activity. This study provides a critical genetic toolkit for metabolic engineering and synthetic biology applications in <em>Salinivibrio</em>.</div></div>\",\"PeriodicalId\":8766,\"journal\":{\"name\":\"Biochemical Engineering Journal\",\"volume\":\"223 \",\"pages\":\"Article 109863\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2025-07-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biochemical Engineering Journal\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1369703X25002372\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biochemical Engineering Journal","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1369703X25002372","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
Development of a high-efficiency constitutive expression system in Salinivibrio strain for next-generation extremophile engineering
The halophilic bacterium Salinivibrio sp. TGB10 represents an emerging microbial chassis for industrial biotechnology, yet its genetic toolkit remains underdeveloped due to insufficient characterization of regulatory elements. Here, we identified and characterized a novel endogenous promoter (p1) through transcriptomic analysis and functional validation. The 185-bp promoter region, located upstream of a gene encoding a hypothetical protein containing leucine-zipper lipoprotein domain, was found to contain all essential regulatory elements including a functional −10 element, extended −10 motif, and −35 element. Through progressive truncation and ribosome binding site engineering, we precisely mapped these elements and revealed their compensatory interactions in transcription initiation. Next, we developed a series of synthetic promoters by randomizing the spacer region between −35 and −10 elements, achieving expression levels spanning four orders of magnitude in Salinivibrio and three orders in Escherichia coli. The practical utility of p1 promoter was demonstrated through efficient production of industrially relevant β-glucosidase, with optimized fermentation conditions yielding 76.83 U/mL activity. This study provides a critical genetic toolkit for metabolic engineering and synthetic biology applications in Salinivibrio.
期刊介绍:
The Biochemical Engineering Journal aims to promote progress in the crucial chemical engineering aspects of the development of biological processes associated with everything from raw materials preparation to product recovery relevant to industries as diverse as medical/healthcare, industrial biotechnology, and environmental biotechnology.
The Journal welcomes full length original research papers, short communications, and review papers* in the following research fields:
Biocatalysis (enzyme or microbial) and biotransformations, including immobilized biocatalyst preparation and kinetics
Biosensors and Biodevices including biofabrication and novel fuel cell development
Bioseparations including scale-up and protein refolding/renaturation
Environmental Bioengineering including bioconversion, bioremediation, and microbial fuel cells
Bioreactor Systems including characterization, optimization and scale-up
Bioresources and Biorefinery Engineering including biomass conversion, biofuels, bioenergy, and optimization
Industrial Biotechnology including specialty chemicals, platform chemicals and neutraceuticals
Biomaterials and Tissue Engineering including bioartificial organs, cell encapsulation, and controlled release
Cell Culture Engineering (plant, animal or insect cells) including viral vectors, monoclonal antibodies, recombinant proteins, vaccines, and secondary metabolites
Cell Therapies and Stem Cells including pluripotent, mesenchymal and hematopoietic stem cells; immunotherapies; tissue-specific differentiation; and cryopreservation
Metabolic Engineering, Systems and Synthetic Biology including OMICS, bioinformatics, in silico biology, and metabolic flux analysis
Protein Engineering including enzyme engineering and directed evolution.