利用曲线回归分析和机器学习方法探索结直肠癌药物拓扑指标的熵测度。

IF 2.6 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
PLoS ONE Pub Date : 2025-07-09 eCollection Date: 2025-01-01 DOI:10.1371/journal.pone.0327369
Maria Fazal, Salma Kanwal, Muhammad Taskeen Raza, Asima Razzaque
{"title":"利用曲线回归分析和机器学习方法探索结直肠癌药物拓扑指标的熵测度。","authors":"Maria Fazal, Salma Kanwal, Muhammad Taskeen Raza, Asima Razzaque","doi":"10.1371/journal.pone.0327369","DOIUrl":null,"url":null,"abstract":"<p><p>A topological index is a numerical value derived from the structure of a molecule or graph that provides useful information about the molecule's physical, chemical, or biological properties. These indices are especially important in chemo-informatics and QSAR/QSPR (Quantitative Structure-Activity Relationship/Quantitative Structure-Property Relationship) studies, where they are used to predict a wide range of properties without the need for experimental measurements. In essence, a topological index is a way to quantify the molecular structure in a form that can be used in mathematical models to estimate the molecule's behavior, activity, or properties. In terms of chemical graph theory and chemo-informatics, entropy-based indices quantify the structural complexity or disorder in a molecule's connectivity. These indices are useful for modeling and predicting molecular properties and biological activities. In this paper, we established a QSPR analysis of colorectal drugs between entropy indices and their physical properties and developed a relationship. Through a comprehensive analysis of these drugs, we gain essential insights into their molecular properties, which are vital for predicting their behavior and effectiveness in treating colorectal cancer. These models are compared with existing degree-based models, highlighting the superior performance of our approach. The QSPR study is performed using curvilinear regression models including linear, quadratic, cubic exponential and logarithmic models. Additionally, we propose the integration of machine learning (ML) techniques to further enhance the predictive accuracy and robustness of our models. By leveraging advanced ML algorithms, we aim to uncover more complex, non-linear relationships between topological indices and drug efficacy, potentially leading to more accurate predictions and better-informed drug design strategies.</p>","PeriodicalId":20189,"journal":{"name":"PLoS ONE","volume":"20 7","pages":"e0327369"},"PeriodicalIF":2.6000,"publicationDate":"2025-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12240351/pdf/","citationCount":"0","resultStr":"{\"title\":\"Exploring entropy measures with topological indices on colorectal cancer drugs using curvilinear regression analysis and machine learning approaches.\",\"authors\":\"Maria Fazal, Salma Kanwal, Muhammad Taskeen Raza, Asima Razzaque\",\"doi\":\"10.1371/journal.pone.0327369\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A topological index is a numerical value derived from the structure of a molecule or graph that provides useful information about the molecule's physical, chemical, or biological properties. These indices are especially important in chemo-informatics and QSAR/QSPR (Quantitative Structure-Activity Relationship/Quantitative Structure-Property Relationship) studies, where they are used to predict a wide range of properties without the need for experimental measurements. In essence, a topological index is a way to quantify the molecular structure in a form that can be used in mathematical models to estimate the molecule's behavior, activity, or properties. In terms of chemical graph theory and chemo-informatics, entropy-based indices quantify the structural complexity or disorder in a molecule's connectivity. These indices are useful for modeling and predicting molecular properties and biological activities. In this paper, we established a QSPR analysis of colorectal drugs between entropy indices and their physical properties and developed a relationship. Through a comprehensive analysis of these drugs, we gain essential insights into their molecular properties, which are vital for predicting their behavior and effectiveness in treating colorectal cancer. These models are compared with existing degree-based models, highlighting the superior performance of our approach. The QSPR study is performed using curvilinear regression models including linear, quadratic, cubic exponential and logarithmic models. Additionally, we propose the integration of machine learning (ML) techniques to further enhance the predictive accuracy and robustness of our models. By leveraging advanced ML algorithms, we aim to uncover more complex, non-linear relationships between topological indices and drug efficacy, potentially leading to more accurate predictions and better-informed drug design strategies.</p>\",\"PeriodicalId\":20189,\"journal\":{\"name\":\"PLoS ONE\",\"volume\":\"20 7\",\"pages\":\"e0327369\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2025-07-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12240351/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"PLoS ONE\",\"FirstCategoryId\":\"103\",\"ListUrlMain\":\"https://doi.org/10.1371/journal.pone.0327369\",\"RegionNum\":3,\"RegionCategory\":\"综合性期刊\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"PLoS ONE","FirstCategoryId":"103","ListUrlMain":"https://doi.org/10.1371/journal.pone.0327369","RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

拓扑指数是从分子或图形的结构中得出的数值,它提供了关于分子的物理、化学或生物特性的有用信息。这些指标在化学信息学和QSAR/QSPR(定量结构-活性关系/定量结构-性质关系)研究中尤其重要,在这些研究中,它们被用来预测广泛的性质,而不需要实验测量。从本质上讲,拓扑指数是一种量化分子结构的方法,这种形式可以用于数学模型来估计分子的行为、活性或性质。在化学图论和化学信息学方面,基于熵的指标量化了分子连通性的结构复杂性或无序性。这些指标可用于分子性质和生物活性的建模和预测。本文建立了结直肠药物的熵指标与物性之间的QSPR分析方法,并建立了二者之间的关系。通过对这些药物的综合分析,我们获得了对其分子特性的基本见解,这对于预测其治疗结直肠癌的行为和有效性至关重要。这些模型与现有的基于程度的模型进行了比较,突出了我们的方法的优越性能。QSPR研究使用曲线回归模型进行,包括线性、二次、三次指数和对数模型。此外,我们建议整合机器学习(ML)技术,以进一步提高我们模型的预测准确性和鲁棒性。通过利用先进的机器学习算法,我们的目标是揭示拓扑指数和药物功效之间更复杂的非线性关系,从而可能导致更准确的预测和更明智的药物设计策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring entropy measures with topological indices on colorectal cancer drugs using curvilinear regression analysis and machine learning approaches.

A topological index is a numerical value derived from the structure of a molecule or graph that provides useful information about the molecule's physical, chemical, or biological properties. These indices are especially important in chemo-informatics and QSAR/QSPR (Quantitative Structure-Activity Relationship/Quantitative Structure-Property Relationship) studies, where they are used to predict a wide range of properties without the need for experimental measurements. In essence, a topological index is a way to quantify the molecular structure in a form that can be used in mathematical models to estimate the molecule's behavior, activity, or properties. In terms of chemical graph theory and chemo-informatics, entropy-based indices quantify the structural complexity or disorder in a molecule's connectivity. These indices are useful for modeling and predicting molecular properties and biological activities. In this paper, we established a QSPR analysis of colorectal drugs between entropy indices and their physical properties and developed a relationship. Through a comprehensive analysis of these drugs, we gain essential insights into their molecular properties, which are vital for predicting their behavior and effectiveness in treating colorectal cancer. These models are compared with existing degree-based models, highlighting the superior performance of our approach. The QSPR study is performed using curvilinear regression models including linear, quadratic, cubic exponential and logarithmic models. Additionally, we propose the integration of machine learning (ML) techniques to further enhance the predictive accuracy and robustness of our models. By leveraging advanced ML algorithms, we aim to uncover more complex, non-linear relationships between topological indices and drug efficacy, potentially leading to more accurate predictions and better-informed drug design strategies.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信