利用平铺扩增子测序在澳大利亚首次检测和追踪葡萄红斑病毒(GRBV)。

IF 2.5 4区 医学 Q3 VIROLOGY
Tonny Kinene, Andrew S Taylor, Richard Fennessy, Brenda A Coutts, David Lovelock, Cuiping Wang, Kamalpreet Kaur, Thao Tran, Brendan Rodoni, Fiona E Constable, Monica A Kehoe
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引用次数: 0

摘要

葡萄红斑病毒;葡萄Grablovirus vitis(种Grablovirus vitis,属Grablovirus,科Geminiviridae)对全球葡萄栽培造成重大威胁,影响葡萄的健康和葡萄酒的质量。在此,我们报告了澳大利亚首次发现和追踪GRBV,并提供了随后调查的总结,以确定GRBV在西澳大利亚的分布程度。此外,该研究还引入了一种平铺扩增子测序方法,该方法与长读纳米孔测序相结合,可以实现GRBV基因组的快速测序。我们的分析表明,GRBV从北美通过维多利亚州传入澳大利亚,随后传入西澳大利亚州。最后,本研究提供了基于菌株变异和分布的GRBV流行病学的见解,这是支持紧急生物安全响应和实施有效控制措施以保障澳大利亚葡萄酒行业可持续发展的关键一步。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
First detection and tracing of grapevine red blotch virus (GRBV) in Australia using tiled amplicon sequencing.

Grapevine red blotch virus (GRBV; species Grablovirus vitis, genus Grablovirus, family Geminiviridae) poses a significant threat to viticulture worldwide, impacting grapevine health and wine quality. Here, we report the first detection and tracing of GRBV in Australia and provide a summary of a subsequent survey to determine the extent of GRBV distribution in Western Australia. Additionally, the study introduces a tiled amplicon sequencing method, which, when combined with long-read nanopore sequencing, enables rapid GRBV genome sequencing. Our analysis suggests a single introduction of GRBV from North America to Australia through the state of Victoria and subsequently to Western Australia. Finally, this study provides insight into the epidemiology of GRBV, based on strain variation and distribution, which is a crucial step in supporting an emergency biosecurity response and implementing effective control measures to safeguard the sustainability of the wine industry in Australia.

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来源期刊
Archives of Virology
Archives of Virology 医学-病毒学
CiteScore
5.10
自引率
7.40%
发文量
324
审稿时长
4.5 months
期刊介绍: Archives of Virology publishes original contributions from all branches of research on viruses, virus-like agents, and virus infections of humans, animals, plants, insects, and bacteria. Coverage spans a broad spectrum of topics, from descriptions of newly discovered viruses, to studies of virus structure, composition, and genetics, to studies of virus interactions with host cells, organisms and populations. Studies employ molecular biologic, molecular genetics, and current immunologic and epidemiologic approaches. Contents include studies on the molecular pathogenesis, pathophysiology, and genetics of virus infections in individual hosts, and studies on the molecular epidemiology of virus infections in populations. Also included are studies involving applied research such as diagnostic technology development, monoclonal antibody panel development, vaccine development, and antiviral drug development.Archives of Virology wishes to publish obituaries of recently deceased well-known virologists and leading figures in virology.
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