Andrés Sánchez, Giovanny Diaz, José Dussan, Marlon Múnera, Jorge Mario Sánchez-Caraballo
{"title":"蜈蚣(Scolopendra subspinipes)主要过敏原Sco m5与过敏原蛋白之间的分子模拟。计算机分析。","authors":"Andrés Sánchez, Giovanny Diaz, José Dussan, Marlon Múnera, Jorge Mario Sánchez-Caraballo","doi":"10.29262/ram.v72i2.1460","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>To evaluate, through in silico analysis, the cross-reactivity between Sco m 5 and arthropod proteins and to identify potential IgE-binding epitopes.</p><p><strong>Methods: </strong>The homology between Sco m 5 and 15 arthropod allergens (<i>Vespula, Polistes, Polybia, Solenopsis, Brachyponera, Phoneutria,</i> and <i>Dermatophagoides</i>) was assessed using the ALLERMATCH server for pairwise alignments and PRALINE for multiple alignments. Phylogenetic trees were constructed using Molecular Evo-lutionary Genetics Analysis (MEGA). Epitope prediction was performed with the Ellipro server. Protein visualization was carried out through PyMOL.</p><p><strong>Results: </strong>The multiple alignment showed 50% identity, and the pairwise alignments between Sco m 5 and arthropod proteins revealed diverse homology. Two linear epitopes and one conformational epitope were identified in Sco m 5, which were highly conserved in the studied arthropod proteins, such as bees, wasps, and ants.</p><p><strong>Conclusion: </strong>The high homology between Sco m 5 and allergens from other arthropods supports the potential for cross-reactivity. The identification of potential epitopes in conserved regions reinforces this idea and could serve as important targets for therapeutic interventions in allergies triggered by arthropod venoms, especially <i>Scolopendra spp.</i> Further <i>in vitro</i> and <i>in vivo</i> studies are needed to confirm these findings.</p>","PeriodicalId":101421,"journal":{"name":"Revista alergia Mexico (Tecamachalco, Puebla, Mexico : 1993)","volume":"72 2","pages":"99-106"},"PeriodicalIF":0.0000,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"[Molecular mimicry between the major allergen of the centipede (Scolopendra subspinipes) Sco M 5 and proteins from allergenic sources. In silico analysis.]\",\"authors\":\"Andrés Sánchez, Giovanny Diaz, José Dussan, Marlon Múnera, Jorge Mario Sánchez-Caraballo\",\"doi\":\"10.29262/ram.v72i2.1460\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Objective: </strong>To evaluate, through in silico analysis, the cross-reactivity between Sco m 5 and arthropod proteins and to identify potential IgE-binding epitopes.</p><p><strong>Methods: </strong>The homology between Sco m 5 and 15 arthropod allergens (<i>Vespula, Polistes, Polybia, Solenopsis, Brachyponera, Phoneutria,</i> and <i>Dermatophagoides</i>) was assessed using the ALLERMATCH server for pairwise alignments and PRALINE for multiple alignments. Phylogenetic trees were constructed using Molecular Evo-lutionary Genetics Analysis (MEGA). Epitope prediction was performed with the Ellipro server. Protein visualization was carried out through PyMOL.</p><p><strong>Results: </strong>The multiple alignment showed 50% identity, and the pairwise alignments between Sco m 5 and arthropod proteins revealed diverse homology. Two linear epitopes and one conformational epitope were identified in Sco m 5, which were highly conserved in the studied arthropod proteins, such as bees, wasps, and ants.</p><p><strong>Conclusion: </strong>The high homology between Sco m 5 and allergens from other arthropods supports the potential for cross-reactivity. The identification of potential epitopes in conserved regions reinforces this idea and could serve as important targets for therapeutic interventions in allergies triggered by arthropod venoms, especially <i>Scolopendra spp.</i> Further <i>in vitro</i> and <i>in vivo</i> studies are needed to confirm these findings.</p>\",\"PeriodicalId\":101421,\"journal\":{\"name\":\"Revista alergia Mexico (Tecamachalco, Puebla, Mexico : 1993)\",\"volume\":\"72 2\",\"pages\":\"99-106\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2025-06-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Revista alergia Mexico (Tecamachalco, Puebla, Mexico : 1993)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.29262/ram.v72i2.1460\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Revista alergia Mexico (Tecamachalco, Puebla, Mexico : 1993)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.29262/ram.v72i2.1460","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
目的:通过计算机分析评价Sco m5与节肢动物蛋白之间的交叉反应性,并鉴定潜在的ige结合表位。方法:使用ALLERMATCH服务器进行配对比对,使用PRALINE进行多组比对,评估Sco m 5与15种节肢动物过敏原(Vespula、Polistes、Polybia、Solenopsis、Brachyponera、Phoneutria和Dermatophagoides)的同源性。利用分子进化遗传学分析(MEGA)构建系统发育树。用Ellipro服务器进行表位预测。通过PyMOL进行蛋白可视化。结果:多重比对显示同源性为50%,与节肢动物蛋白的两两比对显示同源性不同。在Sco 5中鉴定出两个线性表位和一个构象表位,这些表位在蜜蜂、黄蜂和蚂蚁等节肢动物蛋白中高度保守。结论:Sco m5与其他节肢动物过敏原的高度同源性支持了交叉反应的可能性。保守区域潜在表位的鉴定强化了这一观点,并可能作为节肢动物毒液(尤其是蜈蚣)引发的过敏治疗干预的重要靶点。
[Molecular mimicry between the major allergen of the centipede (Scolopendra subspinipes) Sco M 5 and proteins from allergenic sources. In silico analysis.]
Objective: To evaluate, through in silico analysis, the cross-reactivity between Sco m 5 and arthropod proteins and to identify potential IgE-binding epitopes.
Methods: The homology between Sco m 5 and 15 arthropod allergens (Vespula, Polistes, Polybia, Solenopsis, Brachyponera, Phoneutria, and Dermatophagoides) was assessed using the ALLERMATCH server for pairwise alignments and PRALINE for multiple alignments. Phylogenetic trees were constructed using Molecular Evo-lutionary Genetics Analysis (MEGA). Epitope prediction was performed with the Ellipro server. Protein visualization was carried out through PyMOL.
Results: The multiple alignment showed 50% identity, and the pairwise alignments between Sco m 5 and arthropod proteins revealed diverse homology. Two linear epitopes and one conformational epitope were identified in Sco m 5, which were highly conserved in the studied arthropod proteins, such as bees, wasps, and ants.
Conclusion: The high homology between Sco m 5 and allergens from other arthropods supports the potential for cross-reactivity. The identification of potential epitopes in conserved regions reinforces this idea and could serve as important targets for therapeutic interventions in allergies triggered by arthropod venoms, especially Scolopendra spp. Further in vitro and in vivo studies are needed to confirm these findings.