一种基于python的顶点边缘加权模型框架,用于心血管和糖尿病药物分子的增强QSPR分析。

IF 1.8 4区 物理与天体物理 Q4 CHEMISTRY, PHYSICAL
Sezer Sorgun, Asad Ullah
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引用次数: 0

摘要

本研究利用新的顶点-边缘加权(VEW)分子图,对19种常用的治疗心血管疾病和糖尿病的药物分子进行了定量的结构-性质关系分析。通过根据原子性质为顶点和边分配权重来构建图,从而实现分子结构的详细和有化学意义的表示。开发了基于python的程序来计算基于度的拓扑指数,然后通过鲁棒线性回归模型对其进行分析,以揭示与关键物理化学性质的相关性。结果表明,计算指标与物理化学性质之间存在强烈且一致的关系,验证了所提出方法的预测能力。值得注意的是,与传统的未加权分子图模型相比,VEW模型在准确性和相关强度方面有了显著提高,强调了其捕获复杂分子相互作用的能力增强。这项工作为基于度的拓扑指数在药物设计中的应用提供了新的见解,特别是在心血管和糖尿病治疗方面。通过将理论建模与实际药物应用相结合,为优化分子性质、提高药物疗效、加快药物开发管线奠定坚实基础。这些发现重申了计算策略在推进精准医疗和制药创新方面日益增长的重要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A python-based novel vertex-edge-weighted modeling framework for enhanced QSPR analysis of cardiovascular and diabetes drug molecules.

This study advances the quantitative structure-property relationship analysis by leveraging novel vertex-edge-weighted (VEW) molecular graphs to investigate 19 drug molecules commonly used to treat cardiovascular diseases and diabetes. The graphs are constructed by assigning weights to vertices and edges based on atomic properties, enabling a detailed and chemically meaningful representation of molecular structures. Python-based programs were developed to compute degree-based topological indices, which were then analyzed through robust linear regression models to uncover correlations with key physicochemical properties. The results reveal strong and consistent relationships between the computed indices and the physicochemical properties, validating the predictive capability of the proposed approach. Notably, the VEW model demonstrates significant improvements in accuracy and correlation strength over traditional unweighted molecular graph models, underscoring its enhanced ability to capture intricate molecular interactions. This work provides novel insights into the utility of degree-based topological indices in drug design, particularly for cardiovascular and diabetic treatments. By bridging theoretical modeling with practical pharmaceutical applications, it lays a solid foundation for optimizing molecular properties, improving drug efficacy, and accelerating the drug development pipeline. These findings reaffirm the growing significance of computational strategies in advancing precision medicine and pharmaceutical innovation.

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来源期刊
The European Physical Journal E
The European Physical Journal E CHEMISTRY, PHYSICAL-MATERIALS SCIENCE, MULTIDISCIPLINARY
CiteScore
2.60
自引率
5.60%
发文量
92
审稿时长
3 months
期刊介绍: EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems. Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics. Flowing matter refers to all systems that can actually flow, from simple to multiphase liquids, from foams to granular matter. Living matter concerns the new physics that emerges from novel insights into the properties and behaviours of living systems. Furthermore, it aims at developing new concepts and quantitative approaches for the study of biological phenomena. Approaches from soft matter physics and statistical physics play a key role in this research. The journal includes reports of experimental, computational and theoretical studies and appeals to the broad interdisciplinary communities including physics, chemistry, biology, mathematics and materials science.
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