Bo Yuan , Mengyan Ma , Yujie Wu, Jiaxin Liu, Mengyao Chen, Ying Lai, San-Qi Zhang, Minhang Xin
{"title":"通过赖氨酸靶向共价策略发现携带丙氨酸酰胺片段的新型共价PI3Kδ抑制剂","authors":"Bo Yuan , Mengyan Ma , Yujie Wu, Jiaxin Liu, Mengyao Chen, Ying Lai, San-Qi Zhang, Minhang Xin","doi":"10.1016/j.ejmech.2025.117948","DOIUrl":null,"url":null,"abstract":"<div><div>PI3Kδ is involved in a wide range of cellular processes, including cell growth, proliferation and differentiation, making it as one of the most valuable targets for the treatment of hematologic tumors. Herein, we developed a series of novel covalent PI3Kδ inhibitors bearing alaninamide moiety by lysine-targeted covalent strategic design. The optimal compound <strong>M7</strong>, containing the phenolic ester warhead, demonstrated excellent <em>in vitro</em> strong bioactivity and selectivity for PI3Kδ. Furthermore, <strong>M7</strong> exhibited potently antiproliferative activity against SU-DHL-6 and Pfeiffer cells. <strong>M7</strong> significantly reduced p-AKT levels, arrested the cell cycle and induced cell apoptosis. Wash-out experiments demonstrated that <strong>M7</strong> sustained the inhibitory effect on SU-DHL-6 cells and inhibited p-AKT expression consistently. Protein mass spectrometry confirmed the covalent binding of <strong>M7</strong> to K779 of PI3Kδ through amide bonding formation. This study expanded the scope of lysine-targeted covalent design and provided a strong foundation for the development of novel, potent covalent PI3Kδ inhibitors.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"297 ","pages":"Article 117948"},"PeriodicalIF":6.0000,"publicationDate":"2025-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Discovery of novel covalent PI3Kδ inhibitors bearing alaninamide moiety by lysine-targeted covalent strategy\",\"authors\":\"Bo Yuan , Mengyan Ma , Yujie Wu, Jiaxin Liu, Mengyao Chen, Ying Lai, San-Qi Zhang, Minhang Xin\",\"doi\":\"10.1016/j.ejmech.2025.117948\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>PI3Kδ is involved in a wide range of cellular processes, including cell growth, proliferation and differentiation, making it as one of the most valuable targets for the treatment of hematologic tumors. Herein, we developed a series of novel covalent PI3Kδ inhibitors bearing alaninamide moiety by lysine-targeted covalent strategic design. The optimal compound <strong>M7</strong>, containing the phenolic ester warhead, demonstrated excellent <em>in vitro</em> strong bioactivity and selectivity for PI3Kδ. Furthermore, <strong>M7</strong> exhibited potently antiproliferative activity against SU-DHL-6 and Pfeiffer cells. <strong>M7</strong> significantly reduced p-AKT levels, arrested the cell cycle and induced cell apoptosis. Wash-out experiments demonstrated that <strong>M7</strong> sustained the inhibitory effect on SU-DHL-6 cells and inhibited p-AKT expression consistently. Protein mass spectrometry confirmed the covalent binding of <strong>M7</strong> to K779 of PI3Kδ through amide bonding formation. This study expanded the scope of lysine-targeted covalent design and provided a strong foundation for the development of novel, potent covalent PI3Kδ inhibitors.</div></div>\",\"PeriodicalId\":314,\"journal\":{\"name\":\"European Journal of Medicinal Chemistry\",\"volume\":\"297 \",\"pages\":\"Article 117948\"},\"PeriodicalIF\":6.0000,\"publicationDate\":\"2025-07-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"European Journal of Medicinal Chemistry\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0223523425007135\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MEDICINAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"European Journal of Medicinal Chemistry","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0223523425007135","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MEDICINAL","Score":null,"Total":0}
Discovery of novel covalent PI3Kδ inhibitors bearing alaninamide moiety by lysine-targeted covalent strategy
PI3Kδ is involved in a wide range of cellular processes, including cell growth, proliferation and differentiation, making it as one of the most valuable targets for the treatment of hematologic tumors. Herein, we developed a series of novel covalent PI3Kδ inhibitors bearing alaninamide moiety by lysine-targeted covalent strategic design. The optimal compound M7, containing the phenolic ester warhead, demonstrated excellent in vitro strong bioactivity and selectivity for PI3Kδ. Furthermore, M7 exhibited potently antiproliferative activity against SU-DHL-6 and Pfeiffer cells. M7 significantly reduced p-AKT levels, arrested the cell cycle and induced cell apoptosis. Wash-out experiments demonstrated that M7 sustained the inhibitory effect on SU-DHL-6 cells and inhibited p-AKT expression consistently. Protein mass spectrometry confirmed the covalent binding of M7 to K779 of PI3Kδ through amide bonding formation. This study expanded the scope of lysine-targeted covalent design and provided a strong foundation for the development of novel, potent covalent PI3Kδ inhibitors.
期刊介绍:
The European Journal of Medicinal Chemistry is a global journal that publishes studies on all aspects of medicinal chemistry. It provides a medium for publication of original papers and also welcomes critical review papers.
A typical paper would report on the organic synthesis, characterization and pharmacological evaluation of compounds. Other topics of interest are drug design, QSAR, molecular modeling, drug-receptor interactions, molecular aspects of drug metabolism, prodrug synthesis and drug targeting. The journal expects manuscripts to present the rational for a study, provide insight into the design of compounds or understanding of mechanism, or clarify the targets.