通过构效关系分析解锁有效抗结核天然产物。

IF 4.8 3区 化学 Q1 CHEMISTRY, MEDICINAL
Delfly Booby Abdjul, Fitri Budiyanto, Joko Tri Wibowo, Tutik Murniasih, Siti Irma Rahmawati, Dwi Wahyu Indriani, Masteria Yunovilsa Putra, Asep Bayu
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引用次数: 0

摘要

结核病仍然是一个世界卫生问题,原因是受影响人数众多、死亡率高、治疗时间长以及对商业结核病药物的耐药性日益普遍。抗结核药物耐药性的出现迫切需要对药物发现和开发进行研究,重点是针对结核分枝杆菌耐药菌株的新作用机制。天然产物具有显著的结构多样性和生物活性,是开发新的结核病药物或鉴定潜在的化学支架的有希望的来源,这些化学支架具有强大的新型生物活性,对宿主细胞具有最小或无细胞毒性。本文综述了最低抑制浓度(MIC)值低于5µg mL-1的有效抗结核天然产物,并研究了它们的构效关系(SAR)。使用随机森林(Random Forest)和机器学习算法分析每种化合物的重要特征和相关生物学特性,以探索SAR。使用分子对接,AutoDock Vina用于评估分子与蛋白质靶点的相互作用,并使用XGBoost机器学习模型提高预测准确性。这些分析提供了对这些化合物的作用模式的见解,并有助于确定有助于其抗结核活性的关键结构特征。此外,本文综述了所选抗结核化合物的效力与其细胞毒性之间的相关性,为结核药物开发中有前途的支架的鉴定提供了有价值的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Unlocking potent anti-tuberculosis natural products through structure-activity relationship analysis.

Tuberculosis (TB) remains a world health problem due to the high number of affected individuals, high mortality rates, prolonged treatment durations, and the increasing prevalence of resistance to commercial TB drugs. The emergence of resistance to anti-TB drugs has necessitated urgent research into drug discovery and development, focusing on novel mechanisms of action against Mycobacterium tuberculosis resistant strains. Natural products, with their remarkable structural diversity and bioactivity, are promising sources for the development of new TB drugs or the identification of potential chemical scaffolds exhibiting potent and novel biological activity with minimal or no cytotoxicity to host cells. This review focuses on potent anti-TB natural products with minimum inhibitory concentration (MIC) values below 5 µg mL-1 and examines their structure-activity relationship (SAR). Significant characteristics and relevant biological properties of each compound were analysed using a Random Forest, machine learning algorithm, to explore SAR. Using molecular docking, AutoDock Vina was utilised to assess molecular interactions with protein targets, and predictive accuracy was enhanced using the XGBoost machine learning model. These analyses provide insights into the mode of action of these compounds and help identify key structural features contributing to their anti-TB activity. In addition, this review examines the correlation between the potency of selected anti-TB compounds and their cytotoxicity, offering valuable insights for the identification of promising scaffolds in TB drug discovery.

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来源期刊
Natural Products and Bioprospecting
Natural Products and Bioprospecting CHEMISTRY, MEDICINAL-
CiteScore
8.30
自引率
2.10%
发文量
39
审稿时长
13 weeks
期刊介绍: Natural Products and Bioprospecting serves as an international forum for essential research on natural products and focuses on, but is not limited to, the following aspects: Natural products: isolation and structure elucidation Natural products: synthesis Biological evaluation of biologically active natural products Bioorganic and medicinal chemistry Biosynthesis and microbiological transformation Fermentation and plant tissue cultures Bioprospecting of natural products from natural resources All research articles published in this journal have undergone rigorous peer review. In addition to original research articles, Natural Products and Bioprospecting publishes reviews and short communications, aiming to rapidly disseminate the research results of timely interest, and comprehensive reviews of emerging topics in all the areas of natural products. It is also an open access journal, which provides free access to its articles to anyone, anywhere.
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