结合机器学习预测模型的双功能植物合成纳米银缓解芥菜种子萌发过程中盐诱导的休眠和相关真菌感染。

IF 3.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Krish Thakkar, Vaibhav Singh, Prashant Sharma, Prince Jain, Anupam Jyoti, Ashwani Kumar, Saurabhkumar Mehta, Abhijeet Singh, Manish Singh, Juhi Saxena
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引用次数: 0

摘要

植物萌发过程中与真菌感染相关的盐分诱导休眠是造成非生物和生物胁迫的主要因素,导致作物生产力下降。本研究旨在评价柑橘Cymbopogon citratus-derived silver nanoparticles (CC-AgNPs)在促进芥菜种子萌发和预防黑曲霉(ATCC 6275)侵染方面的双重功能。以柑桔无细胞水提物为原料合成AgNPs,并采用变电压液相色谱-质谱法对AgNPs进行表征,用于痕量生物还原化合物的检测。提取物中含有生物碱、类黄酮、氨基酸和皂苷等代谢物。紫外可见光谱显示AgNP合成峰在430 nm处,稳定性可达180天。此外,FTIR峰显示了封顶生物活性作为还原和稳定剂的存在。TEM分析显示AgNP尺寸为33 nm,为球形。用100 ppm CC-AgNPs对盐胁迫下的芥菜种子进行处理,可以显著提高种子的发芽率和幼苗的总生长。这主要得益于绿色纳米银的抗氧化潜力,以及淀粉酶活性(15.53±0.3 mg g-1鲜重min-1)的改善,以增加可溶性糖(15.37±0.3 mg g-1鲜重),以支持发芽过程。此外,通过径向生长抑制实验证实,CC-AgNPs对黑曲霉具有抗真菌活性。机器学习模型,包括Extra Trees、CatBoost、XGBoost和Ensemble Averaging,也被用于预测AgNP处理下的幼苗生长性能,增强了研究的预测和分析能力。分子对接结果表明,CC-AgNPs中的Ag通过与真菌蛋白几丁质脱乙酰酶的特定结构域相互作用,共同介导抗真菌活性。此外,通过对土壤微生物群、人红细胞和人皮肤成纤维细胞系的生物相容性测定,这些CC-AgNPs是安全使用的。本研究结果展望了植物合成AgNPs在纳米喷雾领域的应用前景,不仅可以减轻盐诱导的种子休眠,还可以在种子萌发过程中对抗真菌感染。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bifunctional Phyto-Synthesized Nano Silver for Mitigating Salinity-Induced Dormancy and Associated Fungal Infections During Seed Germination in Brassica juncea with Integration of Machine Learning-Based Predictive Modeling.

Salinity-induced dormancy associated with fungal infection during germination in plants is the major contributor to abiotic and biotic stress, leading to a loss in crop productivity. The present study has been designed to evaluate the dual functions of Cymbopogon citratus-derived silver nanoparticles (CC-AgNPs) for enhancing the germination and prevention of Aspergillus niger (ATCC 6275) infection in seeds of Brassica juncea. AgNPs were synthesized using the cell-free aqueous extract of C. citratus followed by their characterization using LC-MS at variable voltage for trace level detection of compounds responsible for bio-reduction. The extract contained metabolites belonging to alkaloids, flavonoids, amino acid, and saponins. UV-Vis spectra revealed AgNP synthesis with a peak at 430 nm and stability for up to 180 days. Additionally, FTIR peaks demonstrated the presence of capped bioactive as reducing and stabilizing agents. TEM analysis depicted an AgNP size of 33 nm and spherical. Salt-stressed B. juncea seeds were primed with 100 ppm of CC-AgNPs, which significantly increased the germination rates and total seedling growth. This has been mainly favored by the restoration of proteins involved in germination, the antioxidant potential of green nano-silver, along with ameliorating amylase activity (15.53 ± 0.3 mg g-1 fresh weight min-1) for increasing soluble sugars (15.37 ± 0.3 mg g-1 fresh weight) to support the germination process. Furthermore, CC-AgNPs showed antifungal activity against A. niger as demonstrated by radial growth inhibition assay. Machine learning models, including Extra Trees, CatBoost, XGBoost, and Ensemble Averaging, have also been employed to predict seedling growth performance under AgNP treatment, enhancing the predictive and analytical strength of the study. Molecular docking results revealed that Ag in CC-AgNPs collectively mediate the antifungal activity by interacting with specific domains of fungal protein chitin deacetylase. Also, these CC-AgNPs are safe to use, as examined by biocompatibility assays on soil microbiota, human RBCs, and human skin fibroblast cell lines. The results herein prospect the employment of phyto-synthesized AgNPs for nanospray applications in the field, mitigating not only the salt-induced seed dormancy but also battling fungal infections during seed germination.

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来源期刊
Applied Biochemistry and Biotechnology
Applied Biochemistry and Biotechnology 工程技术-生化与分子生物学
CiteScore
5.70
自引率
6.70%
发文量
460
审稿时长
5.3 months
期刊介绍: This journal is devoted to publishing the highest quality innovative papers in the fields of biochemistry and biotechnology. The typical focus of the journal is to report applications of novel scientific and technological breakthroughs, as well as technological subjects that are still in the proof-of-concept stage. Applied Biochemistry and Biotechnology provides a forum for case studies and practical concepts of biotechnology, utilization, including controls, statistical data analysis, problem descriptions unique to a particular application, and bioprocess economic analyses. The journal publishes reviews deemed of interest to readers, as well as book reviews, meeting and symposia notices, and news items relating to biotechnology in both the industrial and academic communities. In addition, Applied Biochemistry and Biotechnology often publishes lists of patents and publications of special interest to readers.
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