Tomas Rypar , Samuele Risoli , Maria Doppler , Christoph Bueschl , Bernhard Seidl , Alexandra Parich , Gerhard Adam , Rainer Schuhmacher
{"title":"稳定同位素辅助代谢组学能够研究(a)小麦中酪氨酸与苯丙氨酸的生物胁迫相关代谢","authors":"Tomas Rypar , Samuele Risoli , Maria Doppler , Christoph Bueschl , Bernhard Seidl , Alexandra Parich , Gerhard Adam , Rainer Schuhmacher","doi":"10.1016/j.plaphy.2025.110214","DOIUrl":null,"url":null,"abstract":"<div><div>To investigate the role of the previously little-studied tyrosine (Tyr), we have used stable isotope-assisted metabolomics to compare its metabolism to the well-studied phenylalanine (Phe) in wheat. Flowering wheat ears were treated either with <sup>13</sup>C<sub>9</sub>-Phe or <sup>13</sup>C<sub>9</sub>-Tyr as metabolic tracers under both control and stress conditions (addition of 0.2 mg per ear of the <em>Fusarium</em> mycotoxin and virulence factor deoxynivalenol (DON)). Overall, 115 Phe- and Tyr-derived wheat metabolites were detected. For <sup>13</sup>C<sub>9</sub>-Tyr, the overall uptake and metabolization of the initially applied tracers (0.5 mg each) was about 40 % compared to 80 % of Phe, and 48 downstream metabolites were shared between both tracers. About one-third of the detected metabolites were found to be significantly induced by DON treatment (DON+). Those belonged to the classes of hydroxycinnamic acids (HCAs), HCA-amides, -glycosides, -quinates and lignans, suggesting their role as precursors for cell wall reinforcement and antifungal compounds. Evaluation of <sup>13</sup>C isotopolog signals revealed that Tyr was incorporated into common downstream metabolites at a rate of approximately 1/6 (mock) and 1/4 (DON) of that compared to Phe. Tyr incorporation was induced upon DON stress compared to control conditions, whereas Phe showed indifferent median incorporation rates. This study highlights the added value and complementarity of using labeled Tyr and Phe as tracers in isotope-assisted metabolomics to improve annotation confidence and biological interpretation of plant metabolic responses to stress.</div></div>","PeriodicalId":20234,"journal":{"name":"Plant Physiology and Biochemistry","volume":"228 ","pages":"Article 110214"},"PeriodicalIF":5.7000,"publicationDate":"2025-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Stable-isotope-assisted metabolomics enables the study of (a)biotic stress-related metabolism of tyrosine compared to phenylalanine in wheat\",\"authors\":\"Tomas Rypar , Samuele Risoli , Maria Doppler , Christoph Bueschl , Bernhard Seidl , Alexandra Parich , Gerhard Adam , Rainer Schuhmacher\",\"doi\":\"10.1016/j.plaphy.2025.110214\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>To investigate the role of the previously little-studied tyrosine (Tyr), we have used stable isotope-assisted metabolomics to compare its metabolism to the well-studied phenylalanine (Phe) in wheat. Flowering wheat ears were treated either with <sup>13</sup>C<sub>9</sub>-Phe or <sup>13</sup>C<sub>9</sub>-Tyr as metabolic tracers under both control and stress conditions (addition of 0.2 mg per ear of the <em>Fusarium</em> mycotoxin and virulence factor deoxynivalenol (DON)). Overall, 115 Phe- and Tyr-derived wheat metabolites were detected. For <sup>13</sup>C<sub>9</sub>-Tyr, the overall uptake and metabolization of the initially applied tracers (0.5 mg each) was about 40 % compared to 80 % of Phe, and 48 downstream metabolites were shared between both tracers. About one-third of the detected metabolites were found to be significantly induced by DON treatment (DON+). Those belonged to the classes of hydroxycinnamic acids (HCAs), HCA-amides, -glycosides, -quinates and lignans, suggesting their role as precursors for cell wall reinforcement and antifungal compounds. Evaluation of <sup>13</sup>C isotopolog signals revealed that Tyr was incorporated into common downstream metabolites at a rate of approximately 1/6 (mock) and 1/4 (DON) of that compared to Phe. Tyr incorporation was induced upon DON stress compared to control conditions, whereas Phe showed indifferent median incorporation rates. This study highlights the added value and complementarity of using labeled Tyr and Phe as tracers in isotope-assisted metabolomics to improve annotation confidence and biological interpretation of plant metabolic responses to stress.</div></div>\",\"PeriodicalId\":20234,\"journal\":{\"name\":\"Plant Physiology and Biochemistry\",\"volume\":\"228 \",\"pages\":\"Article 110214\"},\"PeriodicalIF\":5.7000,\"publicationDate\":\"2025-07-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Physiology and Biochemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0981942825007429\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Physiology and Biochemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0981942825007429","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
Stable-isotope-assisted metabolomics enables the study of (a)biotic stress-related metabolism of tyrosine compared to phenylalanine in wheat
To investigate the role of the previously little-studied tyrosine (Tyr), we have used stable isotope-assisted metabolomics to compare its metabolism to the well-studied phenylalanine (Phe) in wheat. Flowering wheat ears were treated either with 13C9-Phe or 13C9-Tyr as metabolic tracers under both control and stress conditions (addition of 0.2 mg per ear of the Fusarium mycotoxin and virulence factor deoxynivalenol (DON)). Overall, 115 Phe- and Tyr-derived wheat metabolites were detected. For 13C9-Tyr, the overall uptake and metabolization of the initially applied tracers (0.5 mg each) was about 40 % compared to 80 % of Phe, and 48 downstream metabolites were shared between both tracers. About one-third of the detected metabolites were found to be significantly induced by DON treatment (DON+). Those belonged to the classes of hydroxycinnamic acids (HCAs), HCA-amides, -glycosides, -quinates and lignans, suggesting their role as precursors for cell wall reinforcement and antifungal compounds. Evaluation of 13C isotopolog signals revealed that Tyr was incorporated into common downstream metabolites at a rate of approximately 1/6 (mock) and 1/4 (DON) of that compared to Phe. Tyr incorporation was induced upon DON stress compared to control conditions, whereas Phe showed indifferent median incorporation rates. This study highlights the added value and complementarity of using labeled Tyr and Phe as tracers in isotope-assisted metabolomics to improve annotation confidence and biological interpretation of plant metabolic responses to stress.
期刊介绍:
Plant Physiology and Biochemistry publishes original theoretical, experimental and technical contributions in the various fields of plant physiology (biochemistry, physiology, structure, genetics, plant-microbe interactions, etc.) at diverse levels of integration (molecular, subcellular, cellular, organ, whole plant, environmental). Opinions expressed in the journal are the sole responsibility of the authors and publication does not imply the editors'' agreement.
Manuscripts describing molecular-genetic and/or gene expression data that are not integrated with biochemical analysis and/or actual measurements of plant physiological processes are not suitable for PPB. Also "Omics" studies (transcriptomics, proteomics, metabolomics, etc.) reporting descriptive analysis without an element of functional validation assays, will not be considered. Similarly, applied agronomic or phytochemical studies that generate no new, fundamental insights in plant physiological and/or biochemical processes are not suitable for publication in PPB.
Plant Physiology and Biochemistry publishes several types of articles: Reviews, Papers and Short Papers. Articles for Reviews are either invited by the editor or proposed by the authors for the editor''s prior agreement. Reviews should not exceed 40 typewritten pages and Short Papers no more than approximately 8 typewritten pages. The fundamental character of Plant Physiology and Biochemistry remains that of a journal for original results.