{"title":"基于免疫信息学的多形性胶质母细胞瘤(GBM)转化生长因子-2蛋白(TGFB2)多表位疫苗设计","authors":"Deniz Tülümen , Esra Aydemir , Furkan Ayaz","doi":"10.1016/j.ymeth.2025.07.001","DOIUrl":null,"url":null,"abstract":"<div><div>Glioblastoma multiforme (GBM), a malignant glioma, is a central nervous system tumor with a high mortality rate in the world. Despite its high mortality rate, there is no effective treatment yet. Classical treatment methods are usually applied to patients, but patients lose their lives in a short time. A strong vaccine or drug that will extend the life of patients has not yet emerged. In this study, various bioinformatic analyses were performed on the Transforming growth factor beta-2 proprotein (TGFB2) belonging to GBM, and a multi-epitope vaccine design was made. These analyses include allergenicity, antigenicity and toxicity tests, various epitope selections, molecular docking, molecular dynamics simulation and immune simulation analyses. As a result of all analyses, a vaccine candidate called GVac was revealed. Gvac is enhanced with an adjuvant called batroxicidin (BatxC), an antimicrobial peptide. While analyses of Gvac generally yield strong results, it offers the potential to be used in various clinical studies if carried forward. With developing technologies, it is now necessary to move away from classical treatment methods and apply to treatment methods that can provide faster and more effective results. This is also the aim of this study. Gvac may offer hope to GBM patients awaiting treatment around the world and the studies need to be carried forward.</div></div>","PeriodicalId":390,"journal":{"name":"Methods","volume":"242 ","pages":"Pages 38-53"},"PeriodicalIF":4.3000,"publicationDate":"2025-07-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Immunoinformatics-based multi-epitope vaccine design using transforming growth factor beta-2 proprotein (TGFB2) for glioblastoma multiforme (GBM): GVac\",\"authors\":\"Deniz Tülümen , Esra Aydemir , Furkan Ayaz\",\"doi\":\"10.1016/j.ymeth.2025.07.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Glioblastoma multiforme (GBM), a malignant glioma, is a central nervous system tumor with a high mortality rate in the world. Despite its high mortality rate, there is no effective treatment yet. Classical treatment methods are usually applied to patients, but patients lose their lives in a short time. A strong vaccine or drug that will extend the life of patients has not yet emerged. In this study, various bioinformatic analyses were performed on the Transforming growth factor beta-2 proprotein (TGFB2) belonging to GBM, and a multi-epitope vaccine design was made. These analyses include allergenicity, antigenicity and toxicity tests, various epitope selections, molecular docking, molecular dynamics simulation and immune simulation analyses. As a result of all analyses, a vaccine candidate called GVac was revealed. Gvac is enhanced with an adjuvant called batroxicidin (BatxC), an antimicrobial peptide. While analyses of Gvac generally yield strong results, it offers the potential to be used in various clinical studies if carried forward. With developing technologies, it is now necessary to move away from classical treatment methods and apply to treatment methods that can provide faster and more effective results. This is also the aim of this study. Gvac may offer hope to GBM patients awaiting treatment around the world and the studies need to be carried forward.</div></div>\",\"PeriodicalId\":390,\"journal\":{\"name\":\"Methods\",\"volume\":\"242 \",\"pages\":\"Pages 38-53\"},\"PeriodicalIF\":4.3000,\"publicationDate\":\"2025-07-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Methods\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1046202325001483\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Methods","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1046202325001483","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Immunoinformatics-based multi-epitope vaccine design using transforming growth factor beta-2 proprotein (TGFB2) for glioblastoma multiforme (GBM): GVac
Glioblastoma multiforme (GBM), a malignant glioma, is a central nervous system tumor with a high mortality rate in the world. Despite its high mortality rate, there is no effective treatment yet. Classical treatment methods are usually applied to patients, but patients lose their lives in a short time. A strong vaccine or drug that will extend the life of patients has not yet emerged. In this study, various bioinformatic analyses were performed on the Transforming growth factor beta-2 proprotein (TGFB2) belonging to GBM, and a multi-epitope vaccine design was made. These analyses include allergenicity, antigenicity and toxicity tests, various epitope selections, molecular docking, molecular dynamics simulation and immune simulation analyses. As a result of all analyses, a vaccine candidate called GVac was revealed. Gvac is enhanced with an adjuvant called batroxicidin (BatxC), an antimicrobial peptide. While analyses of Gvac generally yield strong results, it offers the potential to be used in various clinical studies if carried forward. With developing technologies, it is now necessary to move away from classical treatment methods and apply to treatment methods that can provide faster and more effective results. This is also the aim of this study. Gvac may offer hope to GBM patients awaiting treatment around the world and the studies need to be carried forward.
期刊介绍:
Methods focuses on rapidly developing techniques in the experimental biological and medical sciences.
Each topical issue, organized by a guest editor who is an expert in the area covered, consists solely of invited quality articles by specialist authors, many of them reviews. Issues are devoted to specific technical approaches with emphasis on clear detailed descriptions of protocols that allow them to be reproduced easily. The background information provided enables researchers to understand the principles underlying the methods; other helpful sections include comparisons of alternative methods giving the advantages and disadvantages of particular methods, guidance on avoiding potential pitfalls, and suggestions for troubleshooting.