微管加端尖端的曲率和弛豫。

IF 3.2 3区 生物学 Q2 BIOPHYSICS
Tomasz Skóra, Jiangbo Wu, Daniel Beckett, Weizhi Xue, Gregory A Voth, Tamara C Bidone
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引用次数: 0

摘要

微管是细胞骨架的重要组成部分,具有广泛的功能,其中微管尖端的结构和动力学起着至关重要的作用。现有的机制模型以不同的方式解释了微管的弯曲动力学:变构模型表明,GTP水解诱导微管亚基的构象改变,使晶格不稳定,导致原丝弯曲和解聚,而晶格模型假设GTP水解直接使微管晶格不稳定。然而,GTP水解对微管尖端弯曲动力学的影响尚不完全清楚。在这项研究中,我们采用多尺度建模方法,结合全原子分子动力学模拟和布朗动力学模拟,研究了微管加端尖端在弯曲构型中的弛豫。我们的研究结果表明,GDP和gtp结合的尖端都表现出原丝向外弯曲成弯曲的公羊角状结构,其特征是曲率与与正端尖端的距离呈线性关系。这些观察结果与不同核苷酸状态下微管正端尖端的实验冷冻- et图像一致。总的来说,我们的研究结果表明,在正端尖端的原丝向外弯曲是微管的固有特征,与核苷酸状态无关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
On the Curvature and Relaxation of Microtubule Plus-end Tips.

Microtubules are essential cytoskeletal components with a broad range of functions in which the structure and dynamics of their plus-end tips play critical roles. Existing mechanistic models explain the tips curving dynamics in different ways: the allosteric model suggests that GTP hydrolysis induces conformational changes in tubulin subunits that destabilize the lattice, leading to protofilament curving and depolymerization, while the lattice model posits that GTP hydrolysis directly destabilizes the microtubule lattice . However, the effect of GTP hydrolysis on the curving dynamics of microtubule tips remains incompletely understood. In this study, we employed a multiscale modeling approach, combining all-atom molecular dynamics simulations with Brownian dynamics simulations, to investigate the relaxation of microtubule plus-end tips into curved configurations. Our results show that both GDP- and GTP-bound tips exhibit an outward bending of protofilaments into curved, ram's horn-like structures, characterized by a linear relationship between curvature and distance from the plus-end tip. These observations align with experimental cryo-ET images of microtubule plus-end tips in different nucleotide states. Collectively, our findings suggest that the outward bending of protofilaments at the plus-end tip is an intrinsic feature of microtubules, independent of the nucleotide state.

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来源期刊
Biophysical journal
Biophysical journal 生物-生物物理
CiteScore
6.10
自引率
5.90%
发文量
3090
审稿时长
2 months
期刊介绍: BJ publishes original articles, letters, and perspectives on important problems in modern biophysics. The papers should be written so as to be of interest to a broad community of biophysicists. BJ welcomes experimental studies that employ quantitative physical approaches for the study of biological systems, including or spanning scales from molecule to whole organism. Experimental studies of a purely descriptive or phenomenological nature, with no theoretical or mechanistic underpinning, are not appropriate for publication in BJ. Theoretical studies should offer new insights into the understanding ofexperimental results or suggest new experimentally testable hypotheses. Articles reporting significant methodological or technological advances, which have potential to open new areas of biophysical investigation, are also suitable for publication in BJ. Papers describing improvements in accuracy or speed of existing methods or extra detail within methods described previously are not suitable for BJ.
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