北冰洋微生物群落与生物氧利用之间的预测联系

IF 3.7 1区 地球科学 Q1 LIMNOLOGY
Emelia J. Chamberlain, Sebastian Rokitta, Björn Rost, Alessandra D'Angelo, Jessie M. Creamean, Brice Loose, Adam Ulfsbo, Allison A. Fong, Clara J. M. Hoppe, Elise S. Droste, Daiki Nomura, Kirstin Schulz, Jeff Bowman
{"title":"北冰洋微生物群落与生物氧利用之间的预测联系","authors":"Emelia J. Chamberlain, Sebastian Rokitta, Björn Rost, Alessandra D'Angelo, Jessie M. Creamean, Brice Loose, Adam Ulfsbo, Allison A. Fong, Clara J. M. Hoppe, Elise S. Droste, Daiki Nomura, Kirstin Schulz, Jeff Bowman","doi":"10.1002/lno.70125","DOIUrl":null,"url":null,"abstract":"Microbial metabolism influences rates of net community production (NCP), exerting a direct biological control on marine oxygen and carbon fluxes. In the Arctic, it is increasingly important to understand and quantify this process, as ecological and oceanographic conditions shift due to changing climate. Here, we describe potential ecological links between pelagic microbial diversity and an NCP precursor, biological oxygen utilization, using machine learning and paired observations of community structure and metabolic activity from a seasonally and spatially variable transect of the Arctic Ocean (2019–2020 MOSAiC Expedition). Community structure was determined using 16S (prokaryotic) and 18S (eukaryotic) rRNA gene amplicon sequencing, and metabolic activity was derived from ΔO<jats:sub>2</jats:sub>/Ar. Using self‐organizing maps, we identified clear successional patterns in observed microbial community structure that were seasonally driven in the upper ocean and vertically stratified with depth. Metabolic activity was also stratified, with a primarily net heterotrophic water column (median −1.5% biological oxygen saturation), excepting periodic oxygen supersaturation (maximum: 13.6%) within the mixed layer. Using DNA sequences as predictor variables, we then constructed a random forest regression model that reliably reconstructed biological oxygen concentrations (root mean squared error = 4.14 <jats:italic>μ</jats:italic>mol kg<jats:sup>−1</jats:sup>). Top predictors from this model were from heterotrophic (bacteria) or potentially mixotrophic (dinoflagellate) taxa. These analyses highlight biologically driven diagnostic tools that can be used to expand biogeochemical datasets and improve the microbial perspectives and metabolisms represented in ecological models of net productivity and carbon flux in a changing Arctic Ocean.","PeriodicalId":18143,"journal":{"name":"Limnology and Oceanography","volume":"1 1","pages":""},"PeriodicalIF":3.7000,"publicationDate":"2025-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Predictive links between microbial communities and biological oxygen utilization in the Arctic Ocean\",\"authors\":\"Emelia J. Chamberlain, Sebastian Rokitta, Björn Rost, Alessandra D'Angelo, Jessie M. Creamean, Brice Loose, Adam Ulfsbo, Allison A. Fong, Clara J. M. Hoppe, Elise S. Droste, Daiki Nomura, Kirstin Schulz, Jeff Bowman\",\"doi\":\"10.1002/lno.70125\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Microbial metabolism influences rates of net community production (NCP), exerting a direct biological control on marine oxygen and carbon fluxes. In the Arctic, it is increasingly important to understand and quantify this process, as ecological and oceanographic conditions shift due to changing climate. Here, we describe potential ecological links between pelagic microbial diversity and an NCP precursor, biological oxygen utilization, using machine learning and paired observations of community structure and metabolic activity from a seasonally and spatially variable transect of the Arctic Ocean (2019–2020 MOSAiC Expedition). Community structure was determined using 16S (prokaryotic) and 18S (eukaryotic) rRNA gene amplicon sequencing, and metabolic activity was derived from ΔO<jats:sub>2</jats:sub>/Ar. Using self‐organizing maps, we identified clear successional patterns in observed microbial community structure that were seasonally driven in the upper ocean and vertically stratified with depth. Metabolic activity was also stratified, with a primarily net heterotrophic water column (median −1.5% biological oxygen saturation), excepting periodic oxygen supersaturation (maximum: 13.6%) within the mixed layer. Using DNA sequences as predictor variables, we then constructed a random forest regression model that reliably reconstructed biological oxygen concentrations (root mean squared error = 4.14 <jats:italic>μ</jats:italic>mol kg<jats:sup>−1</jats:sup>). Top predictors from this model were from heterotrophic (bacteria) or potentially mixotrophic (dinoflagellate) taxa. These analyses highlight biologically driven diagnostic tools that can be used to expand biogeochemical datasets and improve the microbial perspectives and metabolisms represented in ecological models of net productivity and carbon flux in a changing Arctic Ocean.\",\"PeriodicalId\":18143,\"journal\":{\"name\":\"Limnology and Oceanography\",\"volume\":\"1 1\",\"pages\":\"\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2025-07-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Limnology and Oceanography\",\"FirstCategoryId\":\"89\",\"ListUrlMain\":\"https://doi.org/10.1002/lno.70125\",\"RegionNum\":1,\"RegionCategory\":\"地球科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"LIMNOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Limnology and Oceanography","FirstCategoryId":"89","ListUrlMain":"https://doi.org/10.1002/lno.70125","RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"LIMNOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

微生物代谢影响净群落产量(NCP),对海洋氧和碳通量起直接的生物控制作用。在北极,随着生态和海洋条件因气候变化而发生变化,理解和量化这一过程变得越来越重要。在这里,我们利用机器学习和对北冰洋季节性和空间变化样带的群落结构和代谢活动的配对观测,描述了中上层微生物多样性与NCP前体、生物氧利用之间的潜在生态联系(2019-2020 MOSAiC Expedition)。采用16S(原核)和18S(真核)rRNA基因扩增子测序确定群落结构,代谢活性来源于ΔO2/Ar。利用自组织图,我们明确了观察到的微生物群落结构的演替模式,这些模式在海洋上层受季节驱动,并随深度垂直分层。代谢活性也呈分层分布,除混合层内周期性氧过饱和(最大值为13.6%)外,主要为净异养水柱(中位数为- 1.5%)。利用DNA序列作为预测变量,我们构建了一个随机森林回归模型,该模型可靠地重建了生物氧浓度(均方根误差= 4.14 μmol kg−1)。该模型的最高预测因子来自异养(细菌)或潜在的混合营养(鞭毛藻)分类群。这些分析突出了生物学驱动的诊断工具,这些工具可用于扩展生物地球化学数据集,并改善在不断变化的北冰洋净生产力和碳通量的生态模型中所代表的微生物观点和代谢。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Predictive links between microbial communities and biological oxygen utilization in the Arctic Ocean
Microbial metabolism influences rates of net community production (NCP), exerting a direct biological control on marine oxygen and carbon fluxes. In the Arctic, it is increasingly important to understand and quantify this process, as ecological and oceanographic conditions shift due to changing climate. Here, we describe potential ecological links between pelagic microbial diversity and an NCP precursor, biological oxygen utilization, using machine learning and paired observations of community structure and metabolic activity from a seasonally and spatially variable transect of the Arctic Ocean (2019–2020 MOSAiC Expedition). Community structure was determined using 16S (prokaryotic) and 18S (eukaryotic) rRNA gene amplicon sequencing, and metabolic activity was derived from ΔO2/Ar. Using self‐organizing maps, we identified clear successional patterns in observed microbial community structure that were seasonally driven in the upper ocean and vertically stratified with depth. Metabolic activity was also stratified, with a primarily net heterotrophic water column (median −1.5% biological oxygen saturation), excepting periodic oxygen supersaturation (maximum: 13.6%) within the mixed layer. Using DNA sequences as predictor variables, we then constructed a random forest regression model that reliably reconstructed biological oxygen concentrations (root mean squared error = 4.14 μmol kg−1). Top predictors from this model were from heterotrophic (bacteria) or potentially mixotrophic (dinoflagellate) taxa. These analyses highlight biologically driven diagnostic tools that can be used to expand biogeochemical datasets and improve the microbial perspectives and metabolisms represented in ecological models of net productivity and carbon flux in a changing Arctic Ocean.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Limnology and Oceanography
Limnology and Oceanography 地学-海洋学
CiteScore
8.80
自引率
6.70%
发文量
254
审稿时长
3 months
期刊介绍: Limnology and Oceanography (L&O; print ISSN 0024-3590, online ISSN 1939-5590) publishes original articles, including scholarly reviews, about all aspects of limnology and oceanography. The journal''s unifying theme is the understanding of aquatic systems. Submissions are judged on the originality of their data, interpretations, and ideas, and on the degree to which they can be generalized beyond the particular aquatic system examined. Laboratory and modeling studies must demonstrate relevance to field environments; typically this means that they are bolstered by substantial "real-world" data. Few purely theoretical or purely empirical papers are accepted for review.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信