从人类粪便中分离出的celer Bacteroides sp. 11和mucinivorans sp. 11,并将Bacteroides koreensis Shin et al. 2017和Bacteroides kribi Shin et al. 2017重新分类为Bacteroides ovatus egth和Gagnon 1933的后异型同义菌(批准清单1980)。

IF 3.3 4区 生物学 Q2 MICROBIOLOGY
Journal of Microbiology Pub Date : 2025-06-01 Epub Date: 2025-06-30 DOI:10.71150/jm.2502006
Ah-In Yang, Bora Kim, Woorim Kang, Hae-In Joe, Na-Ri Shin
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引用次数: 0

摘要

从未确诊疾病的健康个体的粪便中分离出两种新的革兰氏染色阴性、厌氧和非运动细菌菌株KFT8T和CG01T,并使用多相方法进行鉴定。系统发育分析表明,两株菌株均属于拟杆菌属,其16S rRNA基因序列与设施B. NSJ-77T和诺地B. JCM 12987T的相似性< 99.0%。在拟杆菌属中,菌株KFT8T与B. ovatus ATCC 8483T同源性最高,为94.7%,数字DNA-DNA杂交值为63.7%,菌株CG01T与B. nordii JCM 12987T同源性最高,分别为95.3%和63.3%。这两种新菌株的检出率分别为74.8%和21.4%,均低于种界阈值,可归为新种。菌株KFT8T的主要脂肪酸是C18:1 ω9c,而菌株CG01T主要含有和特征11(包含iso-C17:0 3OH和/或C18:2 DMA)。唯一的呼吸醌是MK-11,主要的极性脂质是磷脂酰乙醇胺。两株菌株的发酵代谢终产物均为琥珀酸和乙酸,乳酸和甲酸分别在两株菌株中检测到。基于多相特征,菌株KFT8T (= KCTC 15614T = JCM 36011T)和CG01T (= KCTC 15613T = JCM 36010T)代表拟杆菌属的两个新种,分别命名为Bacteroides celer sp. 11和Bacteroides mucinivorans sp. 11。此外,基于基因组的分析和表型比较显示,韩国白僵菌和克里比白僵菌代表同一品系,显示出与卵形白僵菌的基因组亲缘关系超过了物种划分的阈值。因此,我们建议将B. koreensis Shin et al. 2017和B. kribi Shin et al. 2017重新分类为B. ovatus Eggerth和Gagnon 1933的后异型同义词(Approved Lists 1980)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bacteroides celer sp. nov. and Bacteroides mucinivorans sp. nov., isolated from human feces, and the reclassification of Bacteroides koreensis Shin et al. 2017 and Bacteroides kribbi Shin et al. 2017 as later heterotypic synonyms of Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980).

Two novel, Gram-stain-negative, anaerobic, and non-motile bacterial strains, designated KFT8T and CG01T, were isolated from the feces of healthy individuals without diagnosed diseases and characterized using a polyphasic approach. Phylogenetic analysis revealed that both strains belong to the genus Bacteroides, with < 99.0% similarity in their 16S rRNA gene sequences to B. facilis NSJ-77T and B. nordii JCM 12987T. Within the genus Bacteroides, strain KFT8T exhibited the highest Orthologous Average Nucleotide Identity value of 94.7% and a digital DNA-DNA hybridization value of 63.7% with B. ovatus ATCC 8483T, whereas strain CG01T showed the highest values of 95.3% and 63.3%, respectively, with B. nordii JCM 12987T. The values between the two novel strains were 74.8% and 21.4%, respectively, which are below the species delineation thresholds, supporting their classification as novel species. The major fatty acid of strain KFT8T was C18:1 ω9c, whereas strain CG01T predominantly contained summed feature 11 (comprising iso-C17:0 3OH and/or C18:2 DMA). The only respiratory quinone was MK-11, the major polar lipid was phosphatidylethanolamine. Both strains produced succinic acid and acetic acid as common metabolic end-products of fermentation, while lactic acid and formic acid were detected individually in each strain. Based on polyphasic characterization, strains KFT8T (= KCTC 15614T = JCM 36011T) and CG01T (= KCTC 15613T = JCM 36010T) represent two novel species within the genus Bacteroides, for which the names Bacteroides celer sp. nov. and Bacteroides mucinivorans sp. nov. are proposed, respectively. Additionally, genome-based analyses and phenotypic comparisons revealed that B. koreensis and B. kribbi represent the same strain, showing genomic relatedness to B. ovatus that exceeds the threshold for species delineation. Consequently, we propose the reclassification of B. koreensis Shin et al. 2017 and B. kribbi Shin et al. 2017 as later heterotypic synonyms of B. ovatus Eggerth and Gagnon 1933 (Approved Lists 1980).

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来源期刊
Journal of Microbiology
Journal of Microbiology 生物-微生物学
CiteScore
5.70
自引率
3.30%
发文量
0
审稿时长
3 months
期刊介绍: Publishes papers that deal with research on microorganisms, including archaea, bacteria, yeasts, fungi, microalgae, protozoa, and simple eukaryotic microorganisms. Topics considered for publication include Microbial Systematics, Evolutionary Microbiology, Microbial Ecology, Environmental Microbiology, Microbial Genetics, Genomics, Molecular Biology, Microbial Physiology, Biochemistry, Microbial Pathogenesis, Host-Microbe Interaction, Systems Microbiology, Synthetic Microbiology, Bioinformatics and Virology. Manuscripts dealing with simple identification of microorganism(s), cloning of a known gene and its expression in a microbial host, and clinical statistics will not be considered for publication by JM.
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