水团簇和液态水极化和拉曼散射的原子模拟方法。

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2025-07-22 Epub Date: 2025-07-01 DOI:10.1021/acs.jctc.5c00452
Atanu Paul, Ilya Grinberg
{"title":"水团簇和液态水极化和拉曼散射的原子模拟方法。","authors":"Atanu Paul, Ilya Grinberg","doi":"10.1021/acs.jctc.5c00452","DOIUrl":null,"url":null,"abstract":"<p><p>In this work, we develop a framework for atomistic modeling of the electronic polarizability to predict the Raman spectra of hydrogen-bonded clusters and liquids from molecular dynamics (MD) simulations. The total polarizability of the system is assumed to arise from the contributions of both the monomer unit and intermolecular interactions. The generalized bond-polarizability model (GBPM), inspired by the classic bond-polarizability model, effectively describes the electronic polarizability of a monomer. To account for the electronic polarizability arising from intermolecular interactions, we use a basis set of rapidly decaying functions of interatomic distances. We apply this model to calculate the electronic polarizability and Raman spectra of water clusters ((H<sub>2</sub>O)<sub><i>r</i></sub>, <i>r</i> = 2, 3, 4, 5, 6) and liquid water. The computational results are compared with the results of quantum mechanical calculations for clusters and experimental data for the liquid. It is demonstrated that this simple and physically motivated model, which relies on a small number of parameters, performs well for clusters at both low and high temperatures, capturing strong anharmonic effects. Moreover, its high transferability suggests its applicability to other water clusters. These results suggest that a hierarchical approach based on Jacob's ladder of increasingly sophisticated and accurate atomistic polarizability models incorporating additional effects can be used for efficient modeling of Raman spectra from MD simulations of clusters, liquids, and solids.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"7017-7026"},"PeriodicalIF":5.5000,"publicationDate":"2025-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Atomistic Approach for Modeling of Polarizability and Raman Scattering of Water Clusters and Liquid Water.\",\"authors\":\"Atanu Paul, Ilya Grinberg\",\"doi\":\"10.1021/acs.jctc.5c00452\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>In this work, we develop a framework for atomistic modeling of the electronic polarizability to predict the Raman spectra of hydrogen-bonded clusters and liquids from molecular dynamics (MD) simulations. The total polarizability of the system is assumed to arise from the contributions of both the monomer unit and intermolecular interactions. The generalized bond-polarizability model (GBPM), inspired by the classic bond-polarizability model, effectively describes the electronic polarizability of a monomer. To account for the electronic polarizability arising from intermolecular interactions, we use a basis set of rapidly decaying functions of interatomic distances. We apply this model to calculate the electronic polarizability and Raman spectra of water clusters ((H<sub>2</sub>O)<sub><i>r</i></sub>, <i>r</i> = 2, 3, 4, 5, 6) and liquid water. The computational results are compared with the results of quantum mechanical calculations for clusters and experimental data for the liquid. It is demonstrated that this simple and physically motivated model, which relies on a small number of parameters, performs well for clusters at both low and high temperatures, capturing strong anharmonic effects. Moreover, its high transferability suggests its applicability to other water clusters. These results suggest that a hierarchical approach based on Jacob's ladder of increasingly sophisticated and accurate atomistic polarizability models incorporating additional effects can be used for efficient modeling of Raman spectra from MD simulations of clusters, liquids, and solids.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\" \",\"pages\":\"7017-7026\"},\"PeriodicalIF\":5.5000,\"publicationDate\":\"2025-07-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.5c00452\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/7/1 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00452","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/7/1 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

在这项工作中,我们开发了一个电子极化率的原子建模框架,用于从分子动力学(MD)模拟中预测氢键团簇和液体的拉曼光谱。系统的总极化率被认为是由单体单位和分子间相互作用的贡献产生的。广义键极化模型(GBPM)在经典键极化模型的启发下,有效地描述了单体的电子极化率。为了解释由分子间相互作用引起的电子极化率,我们使用了一组原子间距离的快速衰减函数。我们应用该模型计算了水团簇((H2O)r, r = 2,3,4,5,6)和液态水的电子极化率和拉曼光谱。计算结果与量子力学对团簇的计算结果和液体的实验数据进行了比较。结果表明,这种简单的物理驱动模型依赖于少量的参数,在低温和高温下都能很好地表现出簇的非调和效应。此外,它的高可转移性表明它适用于其他水簇。这些结果表明,基于雅各布阶梯的越来越复杂和精确的原子极化模型,结合额外的影响,可以用于有效地模拟团簇,液体和固体的拉曼光谱。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Atomistic Approach for Modeling of Polarizability and Raman Scattering of Water Clusters and Liquid Water.

In this work, we develop a framework for atomistic modeling of the electronic polarizability to predict the Raman spectra of hydrogen-bonded clusters and liquids from molecular dynamics (MD) simulations. The total polarizability of the system is assumed to arise from the contributions of both the monomer unit and intermolecular interactions. The generalized bond-polarizability model (GBPM), inspired by the classic bond-polarizability model, effectively describes the electronic polarizability of a monomer. To account for the electronic polarizability arising from intermolecular interactions, we use a basis set of rapidly decaying functions of interatomic distances. We apply this model to calculate the electronic polarizability and Raman spectra of water clusters ((H2O)r, r = 2, 3, 4, 5, 6) and liquid water. The computational results are compared with the results of quantum mechanical calculations for clusters and experimental data for the liquid. It is demonstrated that this simple and physically motivated model, which relies on a small number of parameters, performs well for clusters at both low and high temperatures, capturing strong anharmonic effects. Moreover, its high transferability suggests its applicability to other water clusters. These results suggest that a hierarchical approach based on Jacob's ladder of increasingly sophisticated and accurate atomistic polarizability models incorporating additional effects can be used for efficient modeling of Raman spectra from MD simulations of clusters, liquids, and solids.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信