箭毒蛙的基因组组装草图。

GigaByte (Hong Kong, China) Pub Date : 2025-06-20 eCollection Date: 2025-01-01 DOI:10.46471/gigabyte.157
Roberto Márquez, Denis Jacob Machado, Reyhaneh Nouri, Kerry L Gendreau, Daniel Janies, Ralph A Saporito, Marcus R Kronforst, Taran Grant
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引用次数: 0

摘要

在生物学的许多领域中,石斛毒蛙已经成为公认的模型系统。然而,这些青蛙的分子和遗传资源的开发一直受到它们庞大,高度重复的基因组的阻碍,这些基因组已被证明难以组装。在这里,我们展示了叶状叶(phylloates terribilis) (12.6 Gb)的草案汇编,该草案汇编使用测序平台和生物信息学方法的组合生成。与其他毒蛙测序工作类似,我们恢复了一个高度碎片化的组装,可能是由于基因组的大尺寸和非常高的重复含量,我们估计其为≥88%。尽管组装的低连续性,我们能够注释三个感兴趣的基因集的多个成员(电压门控钠通道和Notch和Wnt信号通路),证明了我们的组装对两栖动物研究界的有用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A draft genome assembly for the dart-poison frog Phyllobates terribilis.

Dendrobatid poison frogs have become well established as model systems in several fields of biology. Nevertheless, the development of molecular and genetic resources for these frogs has been hindered by their large, highly repetitive genomes, which have proven difficult to assemble. Here we present a draft assembly for Phyllobates terribilis (12.6 Gb), generated using a combination of sequencing platforms and bioinformatic approaches. Similar to other poison frog sequencing efforts, we recovered a highly fragmented assembly, likely due to the genome's large size and very high repeat content, which we estimated to be ≍88%. Despite the assembly's low contiguity, we were able to annotate multiple members of three gene sets of interest (voltage-gated sodium channels and Notch and Wnt signaling pathways), demonstrating the usefulness of our assembly to the amphibian research community.

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来源期刊
CiteScore
2.60
自引率
0.00%
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