利用1HN E-CPMG延长快速蛋白动力学的检测时间窗。

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Dwaipayan Mukhopadhyay, Supriya Pratihar, Stefan Becker, Christian Griesinger
{"title":"利用1HN E-CPMG延长快速蛋白动力学的检测时间窗。","authors":"Dwaipayan Mukhopadhyay, Supriya Pratihar, Stefan Becker, Christian Griesinger","doi":"10.1007/s10858-025-00470-1","DOIUrl":null,"url":null,"abstract":"<p><p>Recent advances in high power NMR relaxation dispersion experiments have significantly enhanced our ability to study fast µs timescale motions in proteins, which are crucial for understanding their biological functions. Here, we have extended the detectable time window of such fast dynamics with the development of extreme power <sup>1</sup>H Carr-Purcell-Meiboom-Gill (<sup>1</sup>H E-CPMG) experiments targeted at the backbone amide protons (<sup>1</sup>H<sub>N</sub>). Using this methodology, artifact-free relaxation dispersion profiles can be obtained up to extreme pulsing conditions with minimal setup effort using commonly used standard NMR hardware. We demonstrate the utility of ¹H E-CPMG on human ubiquitin, revealing that the previously reported peptide flip motion influences a larger region of the protein backbone than previously recognized. Additionally, we directly observed a faster dynamic process at residue T09, aligning with previously predicted pincer mode motion. These findings underscore the effectiveness of <sup>1</sup>H E-CPMG in extending the temporal resolution at which biologically relevant fast protein dynamics can be studied.</p>","PeriodicalId":613,"journal":{"name":"Journal of Biomolecular NMR","volume":" ","pages":""},"PeriodicalIF":1.3000,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Extending the detectable time window of fast protein dynamics using <sup>1</sup>H<sub>N</sub> E-CPMG.\",\"authors\":\"Dwaipayan Mukhopadhyay, Supriya Pratihar, Stefan Becker, Christian Griesinger\",\"doi\":\"10.1007/s10858-025-00470-1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Recent advances in high power NMR relaxation dispersion experiments have significantly enhanced our ability to study fast µs timescale motions in proteins, which are crucial for understanding their biological functions. Here, we have extended the detectable time window of such fast dynamics with the development of extreme power <sup>1</sup>H Carr-Purcell-Meiboom-Gill (<sup>1</sup>H E-CPMG) experiments targeted at the backbone amide protons (<sup>1</sup>H<sub>N</sub>). Using this methodology, artifact-free relaxation dispersion profiles can be obtained up to extreme pulsing conditions with minimal setup effort using commonly used standard NMR hardware. We demonstrate the utility of ¹H E-CPMG on human ubiquitin, revealing that the previously reported peptide flip motion influences a larger region of the protein backbone than previously recognized. Additionally, we directly observed a faster dynamic process at residue T09, aligning with previously predicted pincer mode motion. These findings underscore the effectiveness of <sup>1</sup>H E-CPMG in extending the temporal resolution at which biologically relevant fast protein dynamics can be studied.</p>\",\"PeriodicalId\":613,\"journal\":{\"name\":\"Journal of Biomolecular NMR\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":1.3000,\"publicationDate\":\"2025-06-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biomolecular NMR\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s10858-025-00470-1\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomolecular NMR","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s10858-025-00470-1","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

高功率核磁共振弛豫色散实验的最新进展显著增强了我们研究蛋白质中快速µs时间尺度运动的能力,这对于理解其生物学功能至关重要。在这里,我们通过发展针对主酰胺质子(1HN)的极功率1H Carr-Purcell-Meiboom-Gill (1H E-CPMG)实验,延长了这种快速动力学的可探测时间窗口。使用这种方法,可以使用常用的标准核磁共振硬件以最小的设置工作量获得无伪影弛豫色散曲线,达到极端脉冲条件。我们证明了¹H E-CPMG对人类泛素的效用,揭示了先前报道的肽翻转运动影响的蛋白质骨干区域比先前认识到的更大。此外,我们直接观察到残基T09处的动态过程更快,与先前预测的钳形运动一致。这些发现强调了1H E-CPMG在延长时间分辨率方面的有效性,从而可以研究生物相关的快速蛋白质动力学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Extending the detectable time window of fast protein dynamics using 1HN E-CPMG.

Recent advances in high power NMR relaxation dispersion experiments have significantly enhanced our ability to study fast µs timescale motions in proteins, which are crucial for understanding their biological functions. Here, we have extended the detectable time window of such fast dynamics with the development of extreme power 1H Carr-Purcell-Meiboom-Gill (1H E-CPMG) experiments targeted at the backbone amide protons (1HN). Using this methodology, artifact-free relaxation dispersion profiles can be obtained up to extreme pulsing conditions with minimal setup effort using commonly used standard NMR hardware. We demonstrate the utility of ¹H E-CPMG on human ubiquitin, revealing that the previously reported peptide flip motion influences a larger region of the protein backbone than previously recognized. Additionally, we directly observed a faster dynamic process at residue T09, aligning with previously predicted pincer mode motion. These findings underscore the effectiveness of 1H E-CPMG in extending the temporal resolution at which biologically relevant fast protein dynamics can be studied.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信