prunus maculavirus 1 (PrMcV-1)的基因组特征分析。

IF 2.5 4区 医学 Q3 VIROLOGY
Raied Abou Kubaa, Ashrafou Ouro-Djobo, Kristian A Stevens, Olufemi J Alabi, Maher Al Rwahnih
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引用次数: 0

摘要

通过高通量测序,在桃树中鉴定出一种具有(+)ssRNA基因组的新型病毒。该病毒的完整基因组经race验证,暂时命名为“Prunus maculavirus 1”(PrMcV-1;GenBank登录号PV231830),长6664个核苷酸(nt),不包括聚(A)尾部,包含两个开放阅读框(orf)。ORF1 (nt 64-5895)编码一种大型复制相关多蛋白,其包含与甲基转移酶(Mtr)、木瓜蛋白酶(Pro)、解旋酶(Hel)和RNA依赖性RNA聚合酶(RdRp)相关的保守结构域。ORF2 (nt 5571-6478)部分与ORF1重叠并编码衣壳蛋白(CP)。基于两个orf的系统发育分析将PrMcV-1置于Tymoviridae黄斑病毒属的一个独特分支中。实验证明PrMcV-1具有移植物传播性。这项研究扩大了已知的黄斑病毒宿主范围,包括李子物种。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome characterization of prunus maculavirus 1 (PrMcV-1), a novel member of the genus maculavirus identified in prunus spp.

A novel virus with a (+)ssRNA genome was identified in a symptomless peach tree by high-throughput sequencing. The complete RACE-verified genome of the virus, tentatively named "Prunus maculavirus 1" (PrMcV-1; GenBank accession number PV231830), is 6,664 nucleotides (nt) long, excluding the poly(A) tail, and contains two open reading frames (ORFs). ORF1 (nt 64-5895) encodes a large replication-associated polyprotein, which contains conserved domains associated with methyltransferase (Mtr), papain-like protease (Pro), helicase (Hel), and RNA-dependent RNA polymerase (RdRp). ORF2 (nt 5571-6478) partially overlaps ORF1 and encodes the capsid protein (CP). Phylogenetic analysis based on both ORFs placed PrMcV-1 in a distinct clade within the genus Maculavirus of the family Tymoviridae. Experimental evidence showed that PrMcV-1 is graft-transmissible. This study expands the known host range of maculaviruses to include Prunus species.

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来源期刊
Archives of Virology
Archives of Virology 医学-病毒学
CiteScore
5.10
自引率
7.40%
发文量
324
审稿时长
4.5 months
期刊介绍: Archives of Virology publishes original contributions from all branches of research on viruses, virus-like agents, and virus infections of humans, animals, plants, insects, and bacteria. Coverage spans a broad spectrum of topics, from descriptions of newly discovered viruses, to studies of virus structure, composition, and genetics, to studies of virus interactions with host cells, organisms and populations. Studies employ molecular biologic, molecular genetics, and current immunologic and epidemiologic approaches. Contents include studies on the molecular pathogenesis, pathophysiology, and genetics of virus infections in individual hosts, and studies on the molecular epidemiology of virus infections in populations. Also included are studies involving applied research such as diagnostic technology development, monoclonal antibody panel development, vaccine development, and antiviral drug development.Archives of Virology wishes to publish obituaries of recently deceased well-known virologists and leading figures in virology.
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