晶体-探测器距离偏移对序列晶体学数据处理的影响。

IF 2.6 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
PLoS ONE Pub Date : 2025-06-26 eCollection Date: 2025-01-01 DOI:10.1371/journal.pone.0327019
Ki Hyun Nam
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引用次数: 0

摘要

连续晶体学(SX)是一种新兴的技术,可以确定大分子的室温结构,同时最大限度地减少任何辐射损伤。在SX中,许多晶体被连续地传递到x射线相互作用点。晶体到探测器的距离(CTDD)是一个重要的数据处理参数,在样品传送过程中发生变化。然而,这些变化影响数据质量的方式仍然不清楚。因此,本研究旨在评估CTDD精度对SX数据质量的影响。采用三种索引算法对不同ctdd下的蛋清溶菌酶(HEWL)和葡萄糖异构酶(GI)序列同步晶体学数据进行处理。产生最大索引图像数量的CTDD与优化后的CTDD不同,所产生的索引趋势因所使用的算法而异。实际CTDD附近的索引数据呈现高斯单位格分布模式;然而,当CTDD偏离实际CTDD值时,这种模式就会扭曲,从而导致索引单元格尺寸的变化。即使HEWL和GI数据与实际CTDD偏差±10 mm(排除一个数据集),相位问题也成功解决了。对于通过MOSFLM处理的HEWL,尽管有±10 mm的偏差,但结构精细统计仍保持可接受的Rfree值;然而,数据质量随着与实际CTDD偏差的增加而恶化。总的来说,这些结果为有效地处理和解释SX数据提供了有价值的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Effect of crystal-to-detector distance shift on data processing in serial crystallography.

Serial crystallography (SX) is an emerging technique to determine the room-temperature structure of macromolecules while minimizing any radiation damage. In SX, many crystals are continuously delivered to the X-ray interaction points. Crystal-to-detector distance (CTDD), an important data processing parameter, changes during sample delivery. However, the ways in which these variations affect the data quality remain unclear. Therefore, this study aimed to assess the impact of CTDD accuracy on SX data quality. Serial synchrotron crystallographic data of hen egg white lysozyme (HEWL) and glucose isomerase (GI) were processed at various CTDDs using three indexing algorithms. The CTDD that yielded the maximum number of indexed images differed from the optimized CTDD, and the resulting indexing trends varied depending on the algorithm used. The indexed data near the actual CTDD exhibited a Gaussian unit cell distribution pattern; however, this pattern became distorted as the CTDD deviated from the actual CTDD value, resulting in changes in the indexed unit cell dimensions. The phase problem was successfully solved even when HEWL and GI data deviated by ±10 mm from the actual CTDD, excluding one dataset. For HEWL processed via MOSFLM, structure refinement statistics maintained acceptable Rfree values despite a ± 10 mm deviation; however, data quality deteriorated with increasing deviation from the actual CTDD. Collectively, these results provide valuable insights for efficient SX data processing and interpretation.

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来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
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