秘鲁Tacna地热田Geobacillus sp. G4的功能鉴定、基因组组装和注释

IF 4.2 2区 生物学 Q2 MICROBIOLOGY
Alonso R Poma Ticona, Karita C R Santos, Heber E Ramirez-Arua, Roberto Castellanos, Jéssica Pinheiro Silva, Pedro R Vieira Hamann, Eliane F Noronha, Fabyano A C Lopes
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引用次数: 0

摘要

对分离自秘鲁地热田的一种嗜热细菌Geobacillus sp. G4的基因组进行了测序和分析,以评估其分类和生物技术潜力。该菌株在50 ~ 70℃的温度和6.0 ~ 7.5的pH范围内生长最佳。表型分析显示细胞外酶活性,包括淀粉酶、纤维素酶、果胶酶和木聚糖酶,突出了其有效降解多糖的潜力。组装的基因组约3.4 Mb, G+C含量为52.59%,包含3490个基因,包括编码序列、rrna和trna。功能注释揭示了与糖原和海藻糖生物合成等关键代谢途径相关的基因,表明它们适应了富含碳水化合物的环境。基于ANI和dDDH值的系统发育分析表明,热演化地杆菌KCTC3570是其最近的亲缘关系,表明其具有较强的进化关系。此外,该基因组还含有次级代谢物(如β内酯和凤霉素)的基因簇,这表明了潜在的工业和制药应用,包括生物修复。抗生素耐药基因的鉴定,特别是那些赋予糖肽耐药的基因,强调了它们与抗菌素耐药研究的相关性。淀粉酶和普鲁兰酶等酶的存在进一步强调了其生物技术潜力,特别是在淀粉水解和生物燃料生产方面。总的来说,这项研究突出了地杆菌作为耐热酶和生物合成途径的宝贵来源的巨大潜力,可用于工业应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Functional Characterization, Genome Assembly, and Annotation of Geobacillus sp. G4 Isolated from a Geothermal Field in Tacna, Peru.

The genome of Geobacillus sp. G4, a thermophilic bacterium isolated from a geothermal field in Peru, was sequenced and analyzed to evaluate its taxonomic and biotechnological potential. This strain exhibits optimal growth at temperatures between 50 and 70 °C and at a pH range of 6.0-7.5. Phenotypic assays demonstrated extracellular enzymatic activities, including amylases, cellulases, pectinases, and xylanases, highlighting its potential for efficient polysaccharide degradation. The assembled genome comprises approximately 3.4 Mb with a G+C content of 52.59%, containing 3,490 genes, including coding sequences, rRNAs, and tRNAs. Functional annotation revealed genes associated with key metabolic pathways such as glycogen and trehalose biosynthesis, indicating adaptation to carbohydrate-rich environments. Phylogenetic analyses based on ANI and dDDH values identified Geobacillus thermoleovorans KCTC3570 as its closest relative, suggesting a strong evolutionary relationship. Additionally, the genome harbors gene clusters for secondary metabolites such as betalactone and fengycin, suggesting potential industrial and pharmaceutical applications, including bioremediation. The identification of antibiotic resistance genes, specifically those conferring glycopeptide resistance, underscores their relevance for antimicrobial resistance studies. The presence of enzymes like amylases and pullulanase further emphasizes its biotechnological potential, particularly in starch hydrolysis and biofuel production. Overall, this research highlights the significant potential of Geobacillus species as valuable sources of thermostable enzymes and biosynthetic pathways for industrial applications.

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来源期刊
Microorganisms
Microorganisms Medicine-Microbiology (medical)
CiteScore
7.40
自引率
6.70%
发文量
2168
审稿时长
20.03 days
期刊介绍: Microorganisms (ISSN 2076-2607) is an international, peer-reviewed open access journal which provides an advanced forum for studies related to prokaryotic and eukaryotic microorganisms, viruses and prions. It publishes reviews, research papers and communications. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. Electronic files and software regarding the full details of the calculation or experimental procedure, if unable to be published in a normal way, can be deposited as supplementary electronic material.
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