牙卷:一个用于标记、测量和绘制类人猿前牙牙齿组织的R软件包

IF 1.7 2区 生物学 Q1 ANTHROPOLOGY
Antonio Profico, Mathilde Augoyard, Clément Zanolli, Priscilla Bayle
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引用次数: 0

摘要

目的介绍一种新的用于类人猿前牙牙组织标记、测量和绘图的R软件包- Toothnroll。方法输入牙釉质、牙本质和牙髓的三维网格,绘制颈轮廓,沿颈线、牙根尖和牙本质角尖的6个标志。Toothnroll是可定制的,包括一个R函数(ToothAlignment)用于模型对齐。ToothCore和ToothShape功能切割牙齿网格,并从对齐的3D牙齿网格中提取均匀间隔的半地标坐标。这些坐标用于展开牙齿组织,使用Tooth2Dmap函数创建二维形态测量图。牙根体积计算冠和根组织体积。应用牙轮后犬齿和固有的方法学局限性进行了讨论。结果我们将牙卷应用于现代人类中门牙,以证明其在提取线性,体积和地形牙齿测量方面的效用。为了评估其在古生物学中的适用性,我们进行了两个案例研究:(1)展开现代人个体的整个前牙列;(2)比较男性和女性人类上颌的牙齿组织测量和地形分布。牙卷也适用于分析牙根弯曲程度不同的前牙列。牙卷,一个在开源R环境中开发的包,集成了牙齿人类学的关键方法。这些包括牙齿对准和切片,线性和体积的牙齿测量,以及牙釉质和牙本质的形态测量。使用牙轮可以大大提高我们对影响前牙列内结构组织的进化和功能因素的认识。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Toothnroll: An R Package for Landmarking, Measuring, and Mapping Dental Tissues of Hominoid Anterior Teeth

Toothnroll: An R Package for Landmarking, Measuring, and Mapping Dental Tissues of Hominoid Anterior Teeth

Objectives

We present Toothnroll, a new R package for landmarking, measuring and mapping dental tissues of hominoid anterior teeth.

Methods

The required inputs include 3D meshes of enamel, dentine, and pulp, a drawn cervical outline, and six landmarks along the cervical line, root apex, and dentine horn tip. Toothnroll is customizable and includes an R function (ToothAlignment) for model alignment. The ToothCore and ToothShape functions slice the dental meshes and extract coordinates of evenly spaced semilandmarks from the aligned 3D dental meshes. These coordinates are used to unroll tooth tissues to create 2D morphometric maps, using the Tooth2Dmap function. ToothVolumes calculates crown and root tissue volumes. Application of Toothnroll to post-canine teeth and inherent methodological limitations are addressed.

Results

We apply Toothnroll to a modern human central incisor to demonstrate its utility in extracting linear, volumetric, and topographic dental measurements. To evaluate its applicability in paleobiology, we conduct two case studies: (1) the unrolling of the entire anterior dentition of a modern human individual and (2) the comparison of dental tissue measurements and topographic distribution between male and female human upper canines. Toothnroll is also suitable for analyzing anterior dentition with varying degrees of root curvature.

Discussion

Toothnroll, a package developed in the open-source R environment, integrates key methodologies in dental anthropology. These include tooth alignment and sectioning, linear, and volumetric dental measurements, and morphometric mapping of enamel and dentine. Using Toothnroll could significantly enhance our understanding of the evolutionary and functional factors affecting endostructural organization of anterior dentition.

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