{"title":"利用可微分物理信息的光合作用机器学习推断植物驯化和提高模型的可推广性","authors":"Doaa Aboelyazeed, Chonggang Xu, Lianhong Gu, Xiangzhong Luo, Jiangtao Liu, Kathryn Lawson, Chaopeng Shen","doi":"10.1029/2024JG008552","DOIUrl":null,"url":null,"abstract":"<p>Net photosynthesis (<i>A</i><sub><i>N</i></sub>) is a key component of the global carbon cycle influencing climate feedback over decadal scales. Although plant acclimation to environmental changes can modify <i>A</i><sub><i>N</i></sub>, traditional vegetation models in Earth system models (ESMs) often rely on plant functional type (PFT)-specific parameterizations or simplified acclimation assumptions limiting generalizability across time, space, and PFTs. In this study, we developed a differentiable photosynthesis model to learn the environmental dependencies of<i>V</i><sub><i>c</i>,max25</sub> (maximum carboxylation rate at 25°C, representing photosynthetic capacity), as this genre of hybrid physics-informed machine learning can seamlessly train neural networks and process-based equations together. Compared to PFT-specific parameterization of <i>V</i><sub><i>c</i>,max25</sub>, learning the environment dependencies of key photosynthetic parameters improved model spatiotemporal generalizability. Applying environmental acclimation to <i>V</i><sub><i>c</i>,max25</sub> led to substantial variations in global mean <i>A</i><sub><i>N</i></sub> indicating the need to address acclimation in ESMs. The model effectively captured multivariate observations (<i>V</i><sub><i>c</i>,max25</sub>, <i>A</i><sub><i>N</i></sub>, and stomatal conductance (<i>g</i><sub><i>s</i></sub>)) simultaneously with multivariate constraints, improving generalization across space and PFTs. It also learned sensible acclimation relationships of <i>V</i><sub><i>c,</i>max25</sub> to different environmental conditions. The model explained more than 54%, 57%, and 62% of the variance of <i>A</i><sub><i>N</i></sub>, <i>g</i><sub><i>s</i></sub>, and <i>V</i><sub><i>c</i>,max25</sub>, respectively, presenting a first global-scale spatial test benchmark of <i>A</i><sub><i>N</i></sub> and <i>g</i><sub><i>s</i></sub>. These results highlight the potential for differentiable modeling to enhance process-based modules in ESMs and effectively leverage information from large, multivariate data sets.</p>","PeriodicalId":16003,"journal":{"name":"Journal of Geophysical Research: Biogeosciences","volume":"130 7","pages":""},"PeriodicalIF":3.7000,"publicationDate":"2025-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1029/2024JG008552","citationCount":"0","resultStr":"{\"title\":\"Inferring Plant Acclimation and Improving Model Generalizability With Differentiable Physics-Informed Machine Learning of Photosynthesis\",\"authors\":\"Doaa Aboelyazeed, Chonggang Xu, Lianhong Gu, Xiangzhong Luo, Jiangtao Liu, Kathryn Lawson, Chaopeng Shen\",\"doi\":\"10.1029/2024JG008552\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Net photosynthesis (<i>A</i><sub><i>N</i></sub>) is a key component of the global carbon cycle influencing climate feedback over decadal scales. Although plant acclimation to environmental changes can modify <i>A</i><sub><i>N</i></sub>, traditional vegetation models in Earth system models (ESMs) often rely on plant functional type (PFT)-specific parameterizations or simplified acclimation assumptions limiting generalizability across time, space, and PFTs. In this study, we developed a differentiable photosynthesis model to learn the environmental dependencies of<i>V</i><sub><i>c</i>,max25</sub> (maximum carboxylation rate at 25°C, representing photosynthetic capacity), as this genre of hybrid physics-informed machine learning can seamlessly train neural networks and process-based equations together. Compared to PFT-specific parameterization of <i>V</i><sub><i>c</i>,max25</sub>, learning the environment dependencies of key photosynthetic parameters improved model spatiotemporal generalizability. Applying environmental acclimation to <i>V</i><sub><i>c</i>,max25</sub> led to substantial variations in global mean <i>A</i><sub><i>N</i></sub> indicating the need to address acclimation in ESMs. The model effectively captured multivariate observations (<i>V</i><sub><i>c</i>,max25</sub>, <i>A</i><sub><i>N</i></sub>, and stomatal conductance (<i>g</i><sub><i>s</i></sub>)) simultaneously with multivariate constraints, improving generalization across space and PFTs. It also learned sensible acclimation relationships of <i>V</i><sub><i>c,</i>max25</sub> to different environmental conditions. The model explained more than 54%, 57%, and 62% of the variance of <i>A</i><sub><i>N</i></sub>, <i>g</i><sub><i>s</i></sub>, and <i>V</i><sub><i>c</i>,max25</sub>, respectively, presenting a first global-scale spatial test benchmark of <i>A</i><sub><i>N</i></sub> and <i>g</i><sub><i>s</i></sub>. These results highlight the potential for differentiable modeling to enhance process-based modules in ESMs and effectively leverage information from large, multivariate data sets.</p>\",\"PeriodicalId\":16003,\"journal\":{\"name\":\"Journal of Geophysical Research: Biogeosciences\",\"volume\":\"130 7\",\"pages\":\"\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2025-06-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1029/2024JG008552\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Geophysical Research: Biogeosciences\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1029/2024JG008552\",\"RegionNum\":3,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Geophysical Research: Biogeosciences","FirstCategoryId":"93","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1029/2024JG008552","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
Inferring Plant Acclimation and Improving Model Generalizability With Differentiable Physics-Informed Machine Learning of Photosynthesis
Net photosynthesis (AN) is a key component of the global carbon cycle influencing climate feedback over decadal scales. Although plant acclimation to environmental changes can modify AN, traditional vegetation models in Earth system models (ESMs) often rely on plant functional type (PFT)-specific parameterizations or simplified acclimation assumptions limiting generalizability across time, space, and PFTs. In this study, we developed a differentiable photosynthesis model to learn the environmental dependencies ofVc,max25 (maximum carboxylation rate at 25°C, representing photosynthetic capacity), as this genre of hybrid physics-informed machine learning can seamlessly train neural networks and process-based equations together. Compared to PFT-specific parameterization of Vc,max25, learning the environment dependencies of key photosynthetic parameters improved model spatiotemporal generalizability. Applying environmental acclimation to Vc,max25 led to substantial variations in global mean AN indicating the need to address acclimation in ESMs. The model effectively captured multivariate observations (Vc,max25, AN, and stomatal conductance (gs)) simultaneously with multivariate constraints, improving generalization across space and PFTs. It also learned sensible acclimation relationships of Vc,max25 to different environmental conditions. The model explained more than 54%, 57%, and 62% of the variance of AN, gs, and Vc,max25, respectively, presenting a first global-scale spatial test benchmark of AN and gs. These results highlight the potential for differentiable modeling to enhance process-based modules in ESMs and effectively leverage information from large, multivariate data sets.
期刊介绍:
JGR-Biogeosciences focuses on biogeosciences of the Earth system in the past, present, and future and the extension of this research to planetary studies. The emerging field of biogeosciences spans the intellectual interface between biology and the geosciences and attempts to understand the functions of the Earth system across multiple spatial and temporal scales. Studies in biogeosciences may use multiple lines of evidence drawn from diverse fields to gain a holistic understanding of terrestrial, freshwater, and marine ecosystems and extreme environments. Specific topics within the scope of the section include process-based theoretical, experimental, and field studies of biogeochemistry, biogeophysics, atmosphere-, land-, and ocean-ecosystem interactions, biomineralization, life in extreme environments, astrobiology, microbial processes, geomicrobiology, and evolutionary geobiology