{"title":"肉桂疫霉检测方法综述","authors":"Nicholas Wilkins, Harriet Whiley, Kirstin Ross","doi":"10.1016/j.fbr.2025.100441","DOIUrl":null,"url":null,"abstract":"<div><div>Worldwide, <em>Phytophthora cinnamomi</em> is one of the most devastating plant pathogens. It infects almost 5000 plant species, causing death and habitat loss. There is a need for improved monitoring and management strategies to prevent the spread of this plant pathogen. The methods used for detection and identification have been established, but there are many variations depending on the species of <em>Phytophthora</em>, resources available, limitations of time and laboratory protocols, including previous knowledge or specialists involved. This review examined papers published from 2011 to 2025 that describe methods used to detect <em>P. cinnamomi</em> from environmental samples. Sixty-one papers were identified and included in this review. Collectively these papers showed that sampling approaches can include either direct sampling of soil, roots, plant tissue, and water, and indirect sampling by environmental baiting. Detection methods then can contain up to three main processes, including baiting, culture-based detection and isolation, and molecular confirmation. The sampling and detection methods identified in this review were used to develop a decision making flowchart that will help future researchers and management to choose the most appropriate methodological approach to identify <em>P. cinnamomi</em> from the environment. The flow chart presents methods based on laboratory time; resources available; and the type of sample collected. This information will increase the reliability of detection and improve the allocation of resources. This ultimately will improve the monitoring of <em>P. cinnamomi</em> to determine the spread of the pathogen, and to evaluate different management and control strategies to minimise its spread and impact on native vegetation, agriculture, forestry and horticulture.</div></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"53 ","pages":"Article 100441"},"PeriodicalIF":4.6000,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A review of the current methods used to detect Phytophthora cinnamomi\",\"authors\":\"Nicholas Wilkins, Harriet Whiley, Kirstin Ross\",\"doi\":\"10.1016/j.fbr.2025.100441\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Worldwide, <em>Phytophthora cinnamomi</em> is one of the most devastating plant pathogens. It infects almost 5000 plant species, causing death and habitat loss. There is a need for improved monitoring and management strategies to prevent the spread of this plant pathogen. The methods used for detection and identification have been established, but there are many variations depending on the species of <em>Phytophthora</em>, resources available, limitations of time and laboratory protocols, including previous knowledge or specialists involved. This review examined papers published from 2011 to 2025 that describe methods used to detect <em>P. cinnamomi</em> from environmental samples. Sixty-one papers were identified and included in this review. Collectively these papers showed that sampling approaches can include either direct sampling of soil, roots, plant tissue, and water, and indirect sampling by environmental baiting. Detection methods then can contain up to three main processes, including baiting, culture-based detection and isolation, and molecular confirmation. The sampling and detection methods identified in this review were used to develop a decision making flowchart that will help future researchers and management to choose the most appropriate methodological approach to identify <em>P. cinnamomi</em> from the environment. The flow chart presents methods based on laboratory time; resources available; and the type of sample collected. This information will increase the reliability of detection and improve the allocation of resources. This ultimately will improve the monitoring of <em>P. cinnamomi</em> to determine the spread of the pathogen, and to evaluate different management and control strategies to minimise its spread and impact on native vegetation, agriculture, forestry and horticulture.</div></div>\",\"PeriodicalId\":12563,\"journal\":{\"name\":\"Fungal Biology Reviews\",\"volume\":\"53 \",\"pages\":\"Article 100441\"},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2025-06-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Fungal Biology Reviews\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1749461325000314\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Fungal Biology Reviews","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1749461325000314","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
A review of the current methods used to detect Phytophthora cinnamomi
Worldwide, Phytophthora cinnamomi is one of the most devastating plant pathogens. It infects almost 5000 plant species, causing death and habitat loss. There is a need for improved monitoring and management strategies to prevent the spread of this plant pathogen. The methods used for detection and identification have been established, but there are many variations depending on the species of Phytophthora, resources available, limitations of time and laboratory protocols, including previous knowledge or specialists involved. This review examined papers published from 2011 to 2025 that describe methods used to detect P. cinnamomi from environmental samples. Sixty-one papers were identified and included in this review. Collectively these papers showed that sampling approaches can include either direct sampling of soil, roots, plant tissue, and water, and indirect sampling by environmental baiting. Detection methods then can contain up to three main processes, including baiting, culture-based detection and isolation, and molecular confirmation. The sampling and detection methods identified in this review were used to develop a decision making flowchart that will help future researchers and management to choose the most appropriate methodological approach to identify P. cinnamomi from the environment. The flow chart presents methods based on laboratory time; resources available; and the type of sample collected. This information will increase the reliability of detection and improve the allocation of resources. This ultimately will improve the monitoring of P. cinnamomi to determine the spread of the pathogen, and to evaluate different management and control strategies to minimise its spread and impact on native vegetation, agriculture, forestry and horticulture.
期刊介绍:
Fungal Biology Reviews is an international reviews journal, owned by the British Mycological Society. Its objective is to provide a forum for high quality review articles within fungal biology. It covers all fields of fungal biology, whether fundamental or applied, including fungal diversity, ecology, evolution, physiology and ecophysiology, biochemistry, genetics and molecular biology, cell biology, interactions (symbiosis, pathogenesis etc), environmental aspects, biotechnology and taxonomy. It considers aspects of all organisms historically or recently recognized as fungi, including lichen-fungi, microsporidia, oomycetes, slime moulds, stramenopiles, and yeasts.