基于氨基酸的风险分层模型提高弥漫性大b细胞淋巴瘤的预后准确性。

IF 5.3 2区 医学 Q1 ONCOLOGY
Chaowei Zhang, Mingyue Cai, Weiyi Yao, Qing Hong, Yuxuan Han, Na Chen
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引用次数: 0

摘要

弥漫性大b细胞淋巴瘤(DLBCL)是最常见的非霍奇金淋巴瘤亚型。希望为评价患者预后、指导诊断和治疗提供新的概念依据。选取20例新诊断的DLBCL患者作为实验组,10例健康志愿者作为对照组。采用液相色谱-串联质谱法(LC-MS /MS)检测患者和健康对照组血浆中氨基酸的表达。建立稀疏偏最小二乘判别分析(sPLS-DA)模型。对选择的差异氨基酸进行途径富集分析。色氨酸和谷氨酰胺与预后显著相关,可作为潜在的DLBCL生物标志物。利用MATLAB建立偏最小二乘回归(PLSR)预测模型和支持向量回归(SVR)机器学习预测模型。PLSR模型的R²为0.33,RMSE为14.22。预测值与实际值进行配对样本T检验,P = 0.999。SVR模型的R²为0.89,MAE为1.95,MBE为0.77。经训练后,PLSR预后模型和SVR机可以预测DLBCL的预后,为DLBCL的治疗提供方便的指导。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Amino acid-based risk stratification model improves prognostic precision in diffuse large B-cell lymphoma.

Diffuse large B-cell lymphoma (DLBCL) is the most common subtype of non-Hodgkin lymphoma. We hope to provide a new conceptual basis for evaluating patient prognosis and guiding diagnosis and treatment. Twenty patients newly diagnosed with DLBCL were selected as the experimental group, and 10 healthy volunteers composed the control group. The expression of amino acids in the plasma of patients and healthy controls was detected via liquid chromatography-tandem mass spectrometry (LC‒MS/MS). The sparse partial least squares discriminant analysis (sPLS-DA) model was established. Pathway enrichment analysis was performed on the selected differential amino acids. Tryptophan and glutamine, are significantly correlated with prognosis, which can be used as potential DLBCL biomarkers. MATLAB was used to create a partial least squares regression (PLSR) prognostic model and a support vector regression (SVR) machine learning prognostic model. The R²of the PLSR model is 0.33, and the RMSE is 14.22. A paired - sample T - test was conducted on the predicted values and the actual values, with P = 0.999. The R² of the SVR model is 0.89, the MAE is 1.95, and the MBE is 0.77. After training, the PLSR prognostic model and SVR machine can predict the prognosis of DLBCL and provide convenient guidance for the treatment of DLBCL.

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来源期刊
CiteScore
10.90
自引率
1.70%
发文量
360
审稿时长
1 months
期刊介绍: Cancer Cell International publishes articles on all aspects of cancer cell biology, originating largely from, but not limited to, work using cell culture techniques. The journal focuses on novel cancer studies reporting data from biological experiments performed on cells grown in vitro, in two- or three-dimensional systems, and/or in vivo (animal experiments). These types of experiments have provided crucial data in many fields, from cell proliferation and transformation, to epithelial-mesenchymal interaction, to apoptosis, and host immune response to tumors. Cancer Cell International also considers articles that focus on novel technologies or novel pathways in molecular analysis and on epidemiological studies that may affect patient care, as well as articles reporting translational cancer research studies where in vitro discoveries are bridged to the clinic. As such, the journal is interested in laboratory and animal studies reporting on novel biomarkers of tumor progression and response to therapy and on their applicability to human cancers.
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