Pietro Miotti, Matteo Scarpone, Chwee Teck Lim, Igor V. Pivkin
{"title":"一种计算效率高的粘弹性真核细胞模型。","authors":"Pietro Miotti, Matteo Scarpone, Chwee Teck Lim, Igor V. Pivkin","doi":"10.1007/s10439-025-03772-5","DOIUrl":null,"url":null,"abstract":"<div><h3>Purpose</h3><p>Modeling eukaryotic cell flow in microfluidic devices and capillary networks can be instrumental in assessing how cell mechanics influence its behavior. Due to the viscoelastic characteristics of cells and their capacity for substantial deformation, models that are both detailed and computationally efficient are necessary to explore cell rheology. We present a coarse-grained model for simulating the mechanics of eukaryotic cells in flow, with a focus on the modeling of cell membrane, nucleus, and cytoskeleton.</p><h3>Methods</h3><p>The cell and nucleus membranes are represented using surface triangulation, capturing both viscous and elastic properties of the membranes. To maintain computational efficiency while retaining the ability to reproduce the viscoelastic behavior of the entire cell, the complexity of the cytoskeleton model is reduced through the use of the viscoelastic bonds. Dissipative Particle Dynamics is employed to facilitate flow simulations; however, the model is suitable for use in many existing continuum and particle-based methods.</p><h3>Results</h3><p>The cell model is calibrated and validated using experimental data from micropipette aspiration and microfluidic experiments involving breast epithelial cells (MCF-10A).</p><h3>Conclusion</h3><p>We believe the balance between simplicity and accuracy makes the proposed model a valuable tool for simulating eukaryotic cell mechanics in flow, enabling faster simulations, while also simplifying the parameterization procedure.</p></div>","PeriodicalId":7986,"journal":{"name":"Annals of Biomedical Engineering","volume":"53 9","pages":"2047 - 2058"},"PeriodicalIF":5.4000,"publicationDate":"2025-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10439-025-03772-5.pdf","citationCount":"0","resultStr":"{\"title\":\"A Computationally Efficient Viscoelastic Eukaryotic Cell Model\",\"authors\":\"Pietro Miotti, Matteo Scarpone, Chwee Teck Lim, Igor V. Pivkin\",\"doi\":\"10.1007/s10439-025-03772-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Purpose</h3><p>Modeling eukaryotic cell flow in microfluidic devices and capillary networks can be instrumental in assessing how cell mechanics influence its behavior. Due to the viscoelastic characteristics of cells and their capacity for substantial deformation, models that are both detailed and computationally efficient are necessary to explore cell rheology. We present a coarse-grained model for simulating the mechanics of eukaryotic cells in flow, with a focus on the modeling of cell membrane, nucleus, and cytoskeleton.</p><h3>Methods</h3><p>The cell and nucleus membranes are represented using surface triangulation, capturing both viscous and elastic properties of the membranes. To maintain computational efficiency while retaining the ability to reproduce the viscoelastic behavior of the entire cell, the complexity of the cytoskeleton model is reduced through the use of the viscoelastic bonds. Dissipative Particle Dynamics is employed to facilitate flow simulations; however, the model is suitable for use in many existing continuum and particle-based methods.</p><h3>Results</h3><p>The cell model is calibrated and validated using experimental data from micropipette aspiration and microfluidic experiments involving breast epithelial cells (MCF-10A).</p><h3>Conclusion</h3><p>We believe the balance between simplicity and accuracy makes the proposed model a valuable tool for simulating eukaryotic cell mechanics in flow, enabling faster simulations, while also simplifying the parameterization procedure.</p></div>\",\"PeriodicalId\":7986,\"journal\":{\"name\":\"Annals of Biomedical Engineering\",\"volume\":\"53 9\",\"pages\":\"2047 - 2058\"},\"PeriodicalIF\":5.4000,\"publicationDate\":\"2025-06-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://link.springer.com/content/pdf/10.1007/s10439-025-03772-5.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Annals of Biomedical Engineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10439-025-03772-5\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Annals of Biomedical Engineering","FirstCategoryId":"5","ListUrlMain":"https://link.springer.com/article/10.1007/s10439-025-03772-5","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
A Computationally Efficient Viscoelastic Eukaryotic Cell Model
Purpose
Modeling eukaryotic cell flow in microfluidic devices and capillary networks can be instrumental in assessing how cell mechanics influence its behavior. Due to the viscoelastic characteristics of cells and their capacity for substantial deformation, models that are both detailed and computationally efficient are necessary to explore cell rheology. We present a coarse-grained model for simulating the mechanics of eukaryotic cells in flow, with a focus on the modeling of cell membrane, nucleus, and cytoskeleton.
Methods
The cell and nucleus membranes are represented using surface triangulation, capturing both viscous and elastic properties of the membranes. To maintain computational efficiency while retaining the ability to reproduce the viscoelastic behavior of the entire cell, the complexity of the cytoskeleton model is reduced through the use of the viscoelastic bonds. Dissipative Particle Dynamics is employed to facilitate flow simulations; however, the model is suitable for use in many existing continuum and particle-based methods.
Results
The cell model is calibrated and validated using experimental data from micropipette aspiration and microfluidic experiments involving breast epithelial cells (MCF-10A).
Conclusion
We believe the balance between simplicity and accuracy makes the proposed model a valuable tool for simulating eukaryotic cell mechanics in flow, enabling faster simulations, while also simplifying the parameterization procedure.
期刊介绍:
Annals of Biomedical Engineering is an official journal of the Biomedical Engineering Society, publishing original articles in the major fields of bioengineering and biomedical engineering. The Annals is an interdisciplinary and international journal with the aim to highlight integrated approaches to the solutions of biological and biomedical problems.