透明瘤的完整有丝分裂基因组:对透明瘤系统发育的新见解。

IF 1.8 3区 医学 Q2 PARASITOLOGY
Jin Che, Yijun Chai, Wei Li, Shuaiyang Zhao, Jin Luo, Qiaoyun Ren, Qingli Niu, Guiquan Guan, Jinming Wang, Hong Yin
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引用次数: 0

摘要

蜱是专性吸血外寄生虫和各种人畜共患病原体的常见媒介。在本研究中,我们对实验室保存的中国猪透明瘤分离株的圆形有丝分裂全基因组信息进行了测序和组装。全长14714 bp的有丝分裂基因组由37个基因组成,包括13个蛋白质编码基因(PCGs)、22个转移RNA (tRNA)基因和2个核糖体RNA (rRNA)。anatolicum有丝分裂基因组核苷酸序列大致包括A(35.05%)、G(8.70%)、T(41.20%)和C(11.26%),其中A + T(80.04%)的比例显著高于G + C(19.96%)。我们比较了anatolicum的有丝分裂基因组选择压力,发现atp8中检测到正选择信号,与cox1中观察到的强纯化选择形成鲜明对比。利用串联PCGs进行系统发育重建,有力地将安纳托利亚海雀定位在发掘海雀的姊妹分支中。我们进一步验证了cox3, cytb, nad1, nad2, nad3, nad4, nad4L, nad5和nad6是谱系特异性标记,反映了完整的有丝分裂基因组拓扑结构,提出了它们在透明瘤系统分类中的成本效益。分化时间分析表明,Hy. anatolicum是Hyalomma地区最近的物种,约1.95 Mya。据我们所知,这是第一次探索安纳托利海鼠完整的有丝分裂基因组。本研究获得了蜱类有丝分裂基因组全序列,丰富了蜱类有丝分裂基因组数据,为今后蜱类分子进化、种群遗传和系统学研究提供了新的思路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The complete mitogenome of Hyalomma anatolicum: novel insights into the phylogenetics of Hyalomma.

Ticks are obligate blood-sucking ectoparasite and common vector of a wide variety of zoonotic pathogens. In this research, we sequenced and assembled the circular complete mitogenome information of Chinese isolates of Hyalomma anatolicum maintained at the Laboratory. The 14,714 bp mitogenome consists of 37 genes, including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes and 2 ribosomal RNA (rRNA). The nucleotide sequence of Hy. anatolicum mitogenome includes approximately A (35.05%), G (8.70%), T (41.20%) and C (11.26%), the proportion of A + T (80.04%) is substantially higher than G + C (19.96%). We compared mitogenome selection pressure of the Hy. anatolicum and found that positive selection signatures were detected in atp8, contrasting sharply with the strong purifying selection observed in cox1. Phylogenomic reconstruction using concatenated PCGs robustly placed Hy. anatolicum within a clade sister to Hy. excavatum. We further validated cox3, cytb, nad1, nad2, nad3, nad4, nad4L, nad5 and nad6 as lineage-specific markers mirroring full mitogenome topology, proposing their cost-effective use in Hyalomma systematics. The divergence time analysis suggests that Hy. anatolicum was the most recent species in Hyalomma, 1.95 Mya. As far as we know, this is the first study exploring the complete mitogenome for Hy. anatolicum. Here, we obtained the whole mitogenome sequence for the species Hy. anatolicum, which enriched the mitogenome data of ticks, provided new idea for future research on the molecular evolution, population heredity and systematics of ticks.

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来源期刊
Parasitology Research
Parasitology Research 医学-寄生虫学
CiteScore
4.10
自引率
5.00%
发文量
346
审稿时长
6 months
期刊介绍: The journal Parasitology Research covers the latest developments in parasitology across a variety of disciplines, including biology, medicine and veterinary medicine. Among many topics discussed are chemotherapy and control of parasitic disease, and the relationship of host and parasite. Other coverage includes: Protozoology, Helminthology, Entomology; Morphology (incl. Pathomorphology, Ultrastructure); Biochemistry, Physiology including Pathophysiology; Parasite-Host-Relationships including Immunology and Host Specificity; life history, ecology and epidemiology; and Diagnosis, Chemotherapy and Control of Parasitic Diseases.
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