法医STR:一个全面的工具,快速计算法医参数从常染色体STR数据。

IF 2.3 3区 医学 Q1 MEDICINE, LEGAL
Jorge Castillo-Ortiz, Lizzette Salinas-Pineda, N Sofía Huerta-Pacheco, Mariano Guardado-Estrada
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引用次数: 0

摘要

在法医遗传学中,在解决亲子关系或鉴定案件之前,必须对遗传标记的群体数据进行分析,以确保所需计算中估计的质量。目前,有几种分析法医种群参数和种群遗传统计的工具。然而,其中一些工具的使用可能很耗时,因为要熟悉它们需要一个学习曲线,由于法医实验室的工作量,这种情况可能会变得复杂。在这里,我们提出了一个综合的工具,用于快速计算法医学参数和一些群体遗传统计的常染色体短串联重复序列(STR)数据库。这个工具是一个基于web的应用程序(https://enacif.shinyapps.io/Foren-STR/)开发的R,它估计Hardy-Weinberg平衡(HW),匹配概率(PM),辨别力(PD)和排除力(PE)。此外,它可以分析多个种群,并通过热图或通过统计计算遗传距离(如Fst)来图形化地推断是否存在种群子结构。该工具的结果与其他工具相似,为法医遗传学家提供了另一种用户友好的选择。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Foren-STR: a comprehensive tool for rapid calculation of forensic parameters from autosomal STR data.

In forensic genetics, prior to solving paternity or identification cases, it is mandatory to analyze population data of genetic markers to ensure the quality of the estimations in the required calculations. Currently, there are several tools that analyze forensic population parameters and population genetic statistics. However, the use of some of these tools can be time-consuming, as there is a learning curve to get familiarized with them, a situation that can be complicated due to the workload of forensic laboratories. Here, we propose a comprehensive tool for the quick calculation of forensic parameters and some population genetic statistics for an autosomal Short Tandem Repeats (STR) database. This tool is a web-based application ( https://enacif.shinyapps.io/Foren-STR/ ) developed in R, which estimates Hardy-Weinberg equilibrium (HW), probability of match (PM), power of discrimination (PD), and power of exclusion (PE). Additionally, it can analyze more than one population and graphically infer whether there is population substructure through a heatmap or by statistically calculating genetic distances, such as Fst. The results of this tool are similar to those of other tools, providing an alternative and user-friendly option for forensic geneticists.

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来源期刊
CiteScore
5.80
自引率
9.50%
发文量
165
审稿时长
1 months
期刊介绍: The International Journal of Legal Medicine aims to improve the scientific resources used in the elucidation of crime and related forensic applications at a high level of evidential proof. The journal offers review articles tracing development in specific areas, with up-to-date analysis; original articles discussing significant recent research results; case reports describing interesting and exceptional examples; population data; letters to the editors; and technical notes, which appear in a section originally created for rapid publication of data in the dynamic field of DNA analysis.
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