{"title":"光养生物和化养生物细胞大小、Vmax和Km的联系:来自贝叶斯推理的见解","authors":"Risa Sasaki, Mayumi Seto","doi":"10.1111/1758-2229.70114","DOIUrl":null,"url":null,"abstract":"<p>Microbial growth is often described in terms of resource uptake rates, making the understanding and parameterisation of these rate-limiting processes critical for microbial modelling. In phototrophic plankton, theoretical studies suggest that nutrient uptake is limited by mechanistic processes involving membrane transporters, and it has been observed that the cell-specific maximum resource uptake rate (<i>V</i><sub><i>max</i></sub>) follows a power-law relationship with cell size, as well as a trade-off between <i>V</i><sub><i>max</i></sub> and the half-saturation constant (<i>K</i><sub><i>m</i></sub>). These constraints may also apply to chemotrophic microorganisms; however, many datasets lack direct cell-size measurements. We therefore leveraged the assumption that prokaryotic cell sizes, <i>V</i><sub><i>max</i></sub>, and <span><i>K</i></span><sub><span><i>m</i></span></sub> each follow log-normal distributions, drawing parallels with established phytoplankton scaling laws. Our analysis suggests that chemotrophic organisms generally exhibit higher maximum uptake rate per dry weight (<i>V</i><sub><i>maxDW</i></sub>) and <span><i>K</i></span><sub><span><i>m</i></span></sub> values than phototrophs, and that <i>V</i><sub><i>maxDW</i></sub> and <span><i>K</i></span><sub><span><i>m</i></span></sub> are not strongly correlated when all chemotroph data are combined. Furthermore, the Bayesian-derived exponents for <i>V</i><sub><i>maxDW</i></sub> and <span><i>K</i></span><sub><span><i>m</i></span></sub> exceeded those expected from allometric scaling relationships based on the membrane-transport capacity observed for phototrophs, implying that a range of additional factors likely affect observed kinetic parameters.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"17 3","pages":""},"PeriodicalIF":3.6000,"publicationDate":"2025-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1758-2229.70114","citationCount":"0","resultStr":"{\"title\":\"Linking Cell Size, Vmax and Km in Phototrophs and Chemotrophs: Insights From Bayesian Inference\",\"authors\":\"Risa Sasaki, Mayumi Seto\",\"doi\":\"10.1111/1758-2229.70114\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Microbial growth is often described in terms of resource uptake rates, making the understanding and parameterisation of these rate-limiting processes critical for microbial modelling. In phototrophic plankton, theoretical studies suggest that nutrient uptake is limited by mechanistic processes involving membrane transporters, and it has been observed that the cell-specific maximum resource uptake rate (<i>V</i><sub><i>max</i></sub>) follows a power-law relationship with cell size, as well as a trade-off between <i>V</i><sub><i>max</i></sub> and the half-saturation constant (<i>K</i><sub><i>m</i></sub>). These constraints may also apply to chemotrophic microorganisms; however, many datasets lack direct cell-size measurements. We therefore leveraged the assumption that prokaryotic cell sizes, <i>V</i><sub><i>max</i></sub>, and <span><i>K</i></span><sub><span><i>m</i></span></sub> each follow log-normal distributions, drawing parallels with established phytoplankton scaling laws. Our analysis suggests that chemotrophic organisms generally exhibit higher maximum uptake rate per dry weight (<i>V</i><sub><i>maxDW</i></sub>) and <span><i>K</i></span><sub><span><i>m</i></span></sub> values than phototrophs, and that <i>V</i><sub><i>maxDW</i></sub> and <span><i>K</i></span><sub><span><i>m</i></span></sub> are not strongly correlated when all chemotroph data are combined. Furthermore, the Bayesian-derived exponents for <i>V</i><sub><i>maxDW</i></sub> and <span><i>K</i></span><sub><span><i>m</i></span></sub> exceeded those expected from allometric scaling relationships based on the membrane-transport capacity observed for phototrophs, implying that a range of additional factors likely affect observed kinetic parameters.</p>\",\"PeriodicalId\":163,\"journal\":{\"name\":\"Environmental Microbiology Reports\",\"volume\":\"17 3\",\"pages\":\"\"},\"PeriodicalIF\":3.6000,\"publicationDate\":\"2025-06-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1758-2229.70114\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Environmental Microbiology Reports\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/1758-2229.70114\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environmental Microbiology Reports","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/1758-2229.70114","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
Linking Cell Size, Vmax and Km in Phototrophs and Chemotrophs: Insights From Bayesian Inference
Microbial growth is often described in terms of resource uptake rates, making the understanding and parameterisation of these rate-limiting processes critical for microbial modelling. In phototrophic plankton, theoretical studies suggest that nutrient uptake is limited by mechanistic processes involving membrane transporters, and it has been observed that the cell-specific maximum resource uptake rate (Vmax) follows a power-law relationship with cell size, as well as a trade-off between Vmax and the half-saturation constant (Km). These constraints may also apply to chemotrophic microorganisms; however, many datasets lack direct cell-size measurements. We therefore leveraged the assumption that prokaryotic cell sizes, Vmax, and Km each follow log-normal distributions, drawing parallels with established phytoplankton scaling laws. Our analysis suggests that chemotrophic organisms generally exhibit higher maximum uptake rate per dry weight (VmaxDW) and Km values than phototrophs, and that VmaxDW and Km are not strongly correlated when all chemotroph data are combined. Furthermore, the Bayesian-derived exponents for VmaxDW and Km exceeded those expected from allometric scaling relationships based on the membrane-transport capacity observed for phototrophs, implying that a range of additional factors likely affect observed kinetic parameters.
期刊介绍:
The journal is identical in scope to Environmental Microbiology, shares the same editorial team and submission site, and will apply the same high level acceptance criteria. The two journals will be mutually supportive and evolve side-by-side.
Environmental Microbiology Reports provides a high profile vehicle for publication of the most innovative, original and rigorous research in the field. The scope of the Journal encompasses the diversity of current research on microbial processes in the environment, microbial communities, interactions and evolution and includes, but is not limited to, the following:
the structure, activities and communal behaviour of microbial communities
microbial community genetics and evolutionary processes
microbial symbioses, microbial interactions and interactions with plants, animals and abiotic factors
microbes in the tree of life, microbial diversification and evolution
population biology and clonal structure
microbial metabolic and structural diversity
microbial physiology, growth and survival
microbes and surfaces, adhesion and biofouling
responses to environmental signals and stress factors
modelling and theory development
pollution microbiology
extremophiles and life in extreme and unusual little-explored habitats
element cycles and biogeochemical processes, primary and secondary production
microbes in a changing world, microbially-influenced global changes
evolution and diversity of archaeal and bacterial viruses
new technological developments in microbial ecology and evolution, in particular for the study of activities of microbial communities, non-culturable microorganisms and emerging pathogens.