{"title":"基于分子动力学模拟的致病性变异p.L275P对类固醇急性调节蛋白(STAR)结构和功能的新认识","authors":"Shahrzad Aghaei, Mohammad Amin Tabatabaiefar, Javad Saffari-Chaleshtori, Erfan Korram, Sara Sadeghi Amini, Maryam Aghaei, Mahbobeh Koohiyan, Zahra Ataie, Payam Samei, Effat Farrokhi","doi":"10.4103/abr.abr_439_23","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Lipoid congenital adrenal hyperplasia (LCAH) is the lethal form of steroid biosynthesis defects because of mutations in the steroidogenic acute regulatory (<i>STAR</i>) gene. There are two distinct clinical forms including classical and nonclassical without any reliable genotype-phenotype correlation, and investigation of more cases may provide valuable insights.</p><p><strong>Materials and methods: </strong>Ten Iranian families affected by LCAH were selected for genetic linkage analysis. The <i>STAR</i> gene was sequenced in the linked families, and using multiple <i>in silico</i> tools and ACMG guidelines, the pathogenicity of candidate variants was assessed. Also, the structural effects of the identified variant on the STAR behavior were evaluated using molecular docking and molecular dynamics (MD) simulation.</p><p><strong>Results: </strong>Data analysis revealed a pathogenic variant, c.824T>C, (p.L275P), in the <i>STAR</i> gene in the Iranian population for the first time. Furthermore, molecular docking and MD simulation revealed that the c.824T>C variant results in a decrease in total flexibility and secondary structure, an increase in H-bonds and changed fluctuations in some residues.</p><p><strong>Conclusions: </strong>MD simulation provides the key structural and structural insights of the p.L275P -mediated conformational changes in STAR.</p>","PeriodicalId":94292,"journal":{"name":"Advanced biomedical research","volume":"14 ","pages":"46"},"PeriodicalIF":0.7000,"publicationDate":"2025-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12165299/pdf/","citationCount":"0","resultStr":"{\"title\":\"New Insight into Pathogenic Variant p.L275P on the Structure and Function of Steroidogenic Acute Regulatory Protein (STAR) Through Molecular Dynamics Simulation.\",\"authors\":\"Shahrzad Aghaei, Mohammad Amin Tabatabaiefar, Javad Saffari-Chaleshtori, Erfan Korram, Sara Sadeghi Amini, Maryam Aghaei, Mahbobeh Koohiyan, Zahra Ataie, Payam Samei, Effat Farrokhi\",\"doi\":\"10.4103/abr.abr_439_23\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Lipoid congenital adrenal hyperplasia (LCAH) is the lethal form of steroid biosynthesis defects because of mutations in the steroidogenic acute regulatory (<i>STAR</i>) gene. There are two distinct clinical forms including classical and nonclassical without any reliable genotype-phenotype correlation, and investigation of more cases may provide valuable insights.</p><p><strong>Materials and methods: </strong>Ten Iranian families affected by LCAH were selected for genetic linkage analysis. The <i>STAR</i> gene was sequenced in the linked families, and using multiple <i>in silico</i> tools and ACMG guidelines, the pathogenicity of candidate variants was assessed. Also, the structural effects of the identified variant on the STAR behavior were evaluated using molecular docking and molecular dynamics (MD) simulation.</p><p><strong>Results: </strong>Data analysis revealed a pathogenic variant, c.824T>C, (p.L275P), in the <i>STAR</i> gene in the Iranian population for the first time. Furthermore, molecular docking and MD simulation revealed that the c.824T>C variant results in a decrease in total flexibility and secondary structure, an increase in H-bonds and changed fluctuations in some residues.</p><p><strong>Conclusions: </strong>MD simulation provides the key structural and structural insights of the p.L275P -mediated conformational changes in STAR.</p>\",\"PeriodicalId\":94292,\"journal\":{\"name\":\"Advanced biomedical research\",\"volume\":\"14 \",\"pages\":\"46\"},\"PeriodicalIF\":0.7000,\"publicationDate\":\"2025-05-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12165299/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advanced biomedical research\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.4103/abr.abr_439_23\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"MEDICINE, RESEARCH & EXPERIMENTAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advanced biomedical research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.4103/abr.abr_439_23","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"MEDICINE, RESEARCH & EXPERIMENTAL","Score":null,"Total":0}
New Insight into Pathogenic Variant p.L275P on the Structure and Function of Steroidogenic Acute Regulatory Protein (STAR) Through Molecular Dynamics Simulation.
Background: Lipoid congenital adrenal hyperplasia (LCAH) is the lethal form of steroid biosynthesis defects because of mutations in the steroidogenic acute regulatory (STAR) gene. There are two distinct clinical forms including classical and nonclassical without any reliable genotype-phenotype correlation, and investigation of more cases may provide valuable insights.
Materials and methods: Ten Iranian families affected by LCAH were selected for genetic linkage analysis. The STAR gene was sequenced in the linked families, and using multiple in silico tools and ACMG guidelines, the pathogenicity of candidate variants was assessed. Also, the structural effects of the identified variant on the STAR behavior were evaluated using molecular docking and molecular dynamics (MD) simulation.
Results: Data analysis revealed a pathogenic variant, c.824T>C, (p.L275P), in the STAR gene in the Iranian population for the first time. Furthermore, molecular docking and MD simulation revealed that the c.824T>C variant results in a decrease in total flexibility and secondary structure, an increase in H-bonds and changed fluctuations in some residues.
Conclusions: MD simulation provides the key structural and structural insights of the p.L275P -mediated conformational changes in STAR.