海绵Crambe Crambe的染色体基因组序列（Schmidt, 1862）及其相关微生物宏基因组序列。

Q1 Medicine

Wellcome Open Research Pub Date : 2025-05-23 eCollection Date: 2025-01-01 DOI:10.12688/wellcomeopenres.24154.1

Manuel Maldonado, Lucia Pita, Ute Hentschel, Dirk Erpenbeck, Graeme Oatley, Elizabeth Sinclair, Eerik Aunin, Noah Gettle, Camilla Santos, Michael Paulini, Haoyu Niu, Victoria McKenna, Rebecca O'Brien

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引用次数: 0

摘要

我们提出了一个基因组组装从个体Crambe Crambe (Porifera；寻常海绵纲;Poecilosclerida;Crambeidae)。宿主基因组序列全长143.20兆碱基。大部分的组装被搭建成18个染色体假分子。线粒体基因组也已组装完毕，长度为19.53千碱基。几个共生原核生物基因组被组装为MAGs，包括两个相关的海绵共生体，LMA海绵的Candidatus Beroebacter blanensis/ AqS2支系（Tethybacterales, Gammaproteobacteria）和广泛分布的古细菌Nitrosopumilus sp.支系。

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The chromosomal genome sequence of the sponge Crambe crambe (Schmidt, 1862) and its associated microbial metagenome sequences.

We present a genome assembly from an individual Crambe crambe (Porifera; Demospongiae; Poecilosclerida; Crambeidae). The host genome sequence is 143.20 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 19.53 kilobases in length. Several symbiotic prokaryotic genomes were assembled as MAGs, including two relevant sponge symbionts, the Candidatus Beroebacter blanensis/ AqS2 clade (Tethybacterales, Gammaproteobacteria) of LMA sponges, and the widely distributed archaeal Nitrosopumilus sp. clade.

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来源期刊

Wellcome Open Research Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)

CiteScore

5.50

自引率

0.00%

发文量

426

审稿时长

1 weeks

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