Naman Kapoor , Harsh Kashyap , Deepak Ganjewala , Hina Bansal
{"title":"运用网络药理学与分子对接相结合的方法探索阿魏抗癫痫植物化学成分及其分子机制","authors":"Naman Kapoor , Harsh Kashyap , Deepak Ganjewala , Hina Bansal","doi":"10.1016/j.hermed.2025.101033","DOIUrl":null,"url":null,"abstract":"<div><h3>Introduction</h3><div>Epilepsy is a prevalent and devastating neurological disorder that affects 1–2% of the global population particularly in low- and middle-income countries. There is a growing interest in exploring plant-based alternative therapies for epilepsy as none of the available anti-epileptic drugs provide complete prevention. This study aimed to investigate the bioactive compounds from <em>Ferula assafoetida</em> using computational approach to assess their potential antiepileptic activity and elucidate the mechanisms involved.</div></div><div><h3>Methods</h3><div>First, phytochemical data was extracted from IMPPAT database and mapped with PubChem. Then obtained their absorption and distribution patterns using SwissADME. Therapeutic targets associated with epilepsy were recognised using Swiss Target Prediction and GeneCards database. The target-network was constructed and performed topological, gene ontology and pathway enrichment analysis. Finally, molecular docking was performed.</div></div><div><h3>Results</h3><div>Three key bioactive constituents ferocolicin, luteolin, and farnesiferol with potential anti-epileptic activities were identified. These compounds influenced epileptogenesis by targeting proteins GABRA1, GABRA5, GRIN2B, MTOR, PTPRB, and CHRNA4. Molecular docking revealed stable binding of key constituents with three target proteins related to epileptogenesis. The order of binding affinities of the top three compounds to their respective targets was ferocolicin > farnesiferol > luteolin. This suggested a potentially higher therapeutic efficacy and target specificity of these compounds as compared to standard, valproic acid.</div></div><div><h3>Conclusion</h3><div><em>F. assafoetida</em> could be utilised in the treatment of epilepsy by modulating epileptogenesis pathways. The study endorsed the importance of the efficacy of multicomponent, multi-target compound therapies decoding new therapeutic targets for epilepsy and related conditions.</div></div>","PeriodicalId":56077,"journal":{"name":"Journal of Herbal Medicine","volume":"52 ","pages":"Article 101033"},"PeriodicalIF":2.2000,"publicationDate":"2025-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring antiepileptic phytochemicals of Ferula assafoetida and underlying molecular mechanism using a combined approach of network pharmacology and molecular docking\",\"authors\":\"Naman Kapoor , Harsh Kashyap , Deepak Ganjewala , Hina Bansal\",\"doi\":\"10.1016/j.hermed.2025.101033\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Introduction</h3><div>Epilepsy is a prevalent and devastating neurological disorder that affects 1–2% of the global population particularly in low- and middle-income countries. There is a growing interest in exploring plant-based alternative therapies for epilepsy as none of the available anti-epileptic drugs provide complete prevention. This study aimed to investigate the bioactive compounds from <em>Ferula assafoetida</em> using computational approach to assess their potential antiepileptic activity and elucidate the mechanisms involved.</div></div><div><h3>Methods</h3><div>First, phytochemical data was extracted from IMPPAT database and mapped with PubChem. Then obtained their absorption and distribution patterns using SwissADME. Therapeutic targets associated with epilepsy were recognised using Swiss Target Prediction and GeneCards database. The target-network was constructed and performed topological, gene ontology and pathway enrichment analysis. Finally, molecular docking was performed.</div></div><div><h3>Results</h3><div>Three key bioactive constituents ferocolicin, luteolin, and farnesiferol with potential anti-epileptic activities were identified. These compounds influenced epileptogenesis by targeting proteins GABRA1, GABRA5, GRIN2B, MTOR, PTPRB, and CHRNA4. Molecular docking revealed stable binding of key constituents with three target proteins related to epileptogenesis. The order of binding affinities of the top three compounds to their respective targets was ferocolicin > farnesiferol > luteolin. This suggested a potentially higher therapeutic efficacy and target specificity of these compounds as compared to standard, valproic acid.</div></div><div><h3>Conclusion</h3><div><em>F. assafoetida</em> could be utilised in the treatment of epilepsy by modulating epileptogenesis pathways. The study endorsed the importance of the efficacy of multicomponent, multi-target compound therapies decoding new therapeutic targets for epilepsy and related conditions.</div></div>\",\"PeriodicalId\":56077,\"journal\":{\"name\":\"Journal of Herbal Medicine\",\"volume\":\"52 \",\"pages\":\"Article 101033\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2025-05-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Herbal Medicine\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2210803325000442\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"INTEGRATIVE & COMPLEMENTARY MEDICINE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Herbal Medicine","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2210803325000442","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"INTEGRATIVE & COMPLEMENTARY MEDICINE","Score":null,"Total":0}
Exploring antiepileptic phytochemicals of Ferula assafoetida and underlying molecular mechanism using a combined approach of network pharmacology and molecular docking
Introduction
Epilepsy is a prevalent and devastating neurological disorder that affects 1–2% of the global population particularly in low- and middle-income countries. There is a growing interest in exploring plant-based alternative therapies for epilepsy as none of the available anti-epileptic drugs provide complete prevention. This study aimed to investigate the bioactive compounds from Ferula assafoetida using computational approach to assess their potential antiepileptic activity and elucidate the mechanisms involved.
Methods
First, phytochemical data was extracted from IMPPAT database and mapped with PubChem. Then obtained their absorption and distribution patterns using SwissADME. Therapeutic targets associated with epilepsy were recognised using Swiss Target Prediction and GeneCards database. The target-network was constructed and performed topological, gene ontology and pathway enrichment analysis. Finally, molecular docking was performed.
Results
Three key bioactive constituents ferocolicin, luteolin, and farnesiferol with potential anti-epileptic activities were identified. These compounds influenced epileptogenesis by targeting proteins GABRA1, GABRA5, GRIN2B, MTOR, PTPRB, and CHRNA4. Molecular docking revealed stable binding of key constituents with three target proteins related to epileptogenesis. The order of binding affinities of the top three compounds to their respective targets was ferocolicin > farnesiferol > luteolin. This suggested a potentially higher therapeutic efficacy and target specificity of these compounds as compared to standard, valproic acid.
Conclusion
F. assafoetida could be utilised in the treatment of epilepsy by modulating epileptogenesis pathways. The study endorsed the importance of the efficacy of multicomponent, multi-target compound therapies decoding new therapeutic targets for epilepsy and related conditions.
期刊介绍:
The Journal of Herbal Medicine, the official journal of the National Institute of Medical Herbalists, is a peer reviewed journal which aims to serve its readers as an authoritative resource on the profession and practice of herbal medicine. The content areas of the journal reflect the interests of Medical Herbalists and other health professionals interested in the clinical and professional application of botanical medicines. The objective is to strengthen the research and educational base of herbal medicine with research papers in the form of case studies, original research articles and reviews, monographs, clinical trials and relevant in vitro studies. It also publishes policy statements, opinion pieces, book reviews, conference proceedings and profession related information such as pharmacovigilance reports providing an information source for not only the Herbal Practitioner but any Health professional with an interest in phytotherapy.