{"title":"工程P450单加氧酶F182L-CYP199A4催化α-羟基酮C-C键断裂机理研究","authors":"Sujiao Zhao, and , Yongjun Liu*, ","doi":"10.1021/acs.inorgchem.4c0539010.1021/acs.inorgchem.4c05390","DOIUrl":null,"url":null,"abstract":"<p >In addition to the typical oxygen insertion reaction, some cytochrome P450 also catalyze the C–C cleavage, and most P450 employs Cpd I to trigger lyase reactions. There is also evidence to support an alternative mechanism, in which a species earlier than the formation of Cpd I was suggested to perform the lyase reaction. To understand the detailed reaction mechanism, we performed quantum mechanics/molecular mechanics (QM/MM) calculations to explore the cleavage mechanism of mutated CYP199A4 (F182L-CYP199A4). Our calculation results reveal that the peroxoanion (Fe(III)–O–O<sup>2–</sup>) rather than oxo-ferrous (Fe(III)–O–O<sup>1–</sup>) and Cpd I is responsible for initiating the reaction. The Fe(III)–O–O<sup>2–</sup> nucleophilic directly attacks the carbonyl of the substrate, which first generates an unstable peroxo intermediate, followed by the Baeyer–Villiger-type oxidative cleavage of the C–C bond. During the reaction, complex electronic and structural rearrangements are involved. In the active site of F182L-CYP199A4, the formation of Cpd I is successfully slowed down owing to the absence of mediated water to promote two steps of protonation of Fe-coordinated dioxygen. In addition, Fe(III)–O–O<sup>2–</sup> shows higher reactivity than Fe(III)–O–O<sup>1–</sup> toward C–C cleavage. In general, the fact that CYP can also employ the peroxoanion to execute the C–C bond cleavage further enriches the catalytic chemistry of P450.</p>","PeriodicalId":40,"journal":{"name":"Inorganic Chemistry","volume":"64 23","pages":"11342–11356 11342–11356"},"PeriodicalIF":4.7000,"publicationDate":"2025-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Mechanistic Investigation on the C–C Bond Cleavage of α-Hydroxy Ketone Catalyzed by Engineering P450 Monooxygenase Enzyme F182L-CYP199A4\",\"authors\":\"Sujiao Zhao, and , Yongjun Liu*, \",\"doi\":\"10.1021/acs.inorgchem.4c0539010.1021/acs.inorgchem.4c05390\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >In addition to the typical oxygen insertion reaction, some cytochrome P450 also catalyze the C–C cleavage, and most P450 employs Cpd I to trigger lyase reactions. There is also evidence to support an alternative mechanism, in which a species earlier than the formation of Cpd I was suggested to perform the lyase reaction. To understand the detailed reaction mechanism, we performed quantum mechanics/molecular mechanics (QM/MM) calculations to explore the cleavage mechanism of mutated CYP199A4 (F182L-CYP199A4). Our calculation results reveal that the peroxoanion (Fe(III)–O–O<sup>2–</sup>) rather than oxo-ferrous (Fe(III)–O–O<sup>1–</sup>) and Cpd I is responsible for initiating the reaction. The Fe(III)–O–O<sup>2–</sup> nucleophilic directly attacks the carbonyl of the substrate, which first generates an unstable peroxo intermediate, followed by the Baeyer–Villiger-type oxidative cleavage of the C–C bond. During the reaction, complex electronic and structural rearrangements are involved. In the active site of F182L-CYP199A4, the formation of Cpd I is successfully slowed down owing to the absence of mediated water to promote two steps of protonation of Fe-coordinated dioxygen. In addition, Fe(III)–O–O<sup>2–</sup> shows higher reactivity than Fe(III)–O–O<sup>1–</sup> toward C–C cleavage. In general, the fact that CYP can also employ the peroxoanion to execute the C–C bond cleavage further enriches the catalytic chemistry of P450.</p>\",\"PeriodicalId\":40,\"journal\":{\"name\":\"Inorganic Chemistry\",\"volume\":\"64 23\",\"pages\":\"11342–11356 11342–11356\"},\"PeriodicalIF\":4.7000,\"publicationDate\":\"2025-06-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Inorganic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/acs.inorgchem.4c05390\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, INORGANIC & NUCLEAR\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Inorganic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.inorgchem.4c05390","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, INORGANIC & NUCLEAR","Score":null,"Total":0}
Mechanistic Investigation on the C–C Bond Cleavage of α-Hydroxy Ketone Catalyzed by Engineering P450 Monooxygenase Enzyme F182L-CYP199A4
In addition to the typical oxygen insertion reaction, some cytochrome P450 also catalyze the C–C cleavage, and most P450 employs Cpd I to trigger lyase reactions. There is also evidence to support an alternative mechanism, in which a species earlier than the formation of Cpd I was suggested to perform the lyase reaction. To understand the detailed reaction mechanism, we performed quantum mechanics/molecular mechanics (QM/MM) calculations to explore the cleavage mechanism of mutated CYP199A4 (F182L-CYP199A4). Our calculation results reveal that the peroxoanion (Fe(III)–O–O2–) rather than oxo-ferrous (Fe(III)–O–O1–) and Cpd I is responsible for initiating the reaction. The Fe(III)–O–O2– nucleophilic directly attacks the carbonyl of the substrate, which first generates an unstable peroxo intermediate, followed by the Baeyer–Villiger-type oxidative cleavage of the C–C bond. During the reaction, complex electronic and structural rearrangements are involved. In the active site of F182L-CYP199A4, the formation of Cpd I is successfully slowed down owing to the absence of mediated water to promote two steps of protonation of Fe-coordinated dioxygen. In addition, Fe(III)–O–O2– shows higher reactivity than Fe(III)–O–O1– toward C–C cleavage. In general, the fact that CYP can also employ the peroxoanion to execute the C–C bond cleavage further enriches the catalytic chemistry of P450.
期刊介绍:
Inorganic Chemistry publishes fundamental studies in all phases of inorganic chemistry. Coverage includes experimental and theoretical reports on quantitative studies of structure and thermodynamics, kinetics, mechanisms of inorganic reactions, bioinorganic chemistry, and relevant aspects of organometallic chemistry, solid-state phenomena, and chemical bonding theory. Emphasis is placed on the synthesis, structure, thermodynamics, reactivity, spectroscopy, and bonding properties of significant new and known compounds.