基于位置敏感哈希的深度潜能训练数据集约简。

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2025-06-24 Epub Date: 2025-06-10 DOI:10.1021/acs.jctc.5c00366
Anmol, Anuj Kumar Sirohi, Neha, Jayadeva, Sandeep Kumar, Tarak Karmakar
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引用次数: 0

摘要

机器学习方法为开发从简单流体到复杂固体的各种系统的从头算质量潜力提供了很大的范围。然而,这些方法通常需要大量的数据集来进行有效的模型训练,并且ML潜力的准确性高度依赖于数据质量,需要昂贵的从头计算。为了解决这一挑战,我们提出了一种基于位置敏感散列的新方法,旨在最大限度地减少数据集大小,从而减少昂贵的量子化学计算次数,同时保持数据集的多样性和准确性。我们的方法实现了近一个数量级的数据集缩减。为了证明该方法的有效性,我们将其应用于开发ML势来研究显式溶剂中的典型化学反应和一阶相变。最后,利用这些ML势的回火元动力学模拟使我们能够计算化学反应和相变的收敛自由能面。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Locality-Sensitive Hashing-Based Data Set Reduction for Deep Potential Training.

Machine learning methods provide a great scope for developing ab initio quality potentials for diverse systems, ranging from simple fluids to complex solids. However, these methods typically require extensive data sets for effective model training, and the accuracy of the ML potential is highly dependent on data quality, necessitating expensive ab initio calculations. To address this challenge, we present a novel method based on locality-sensitive hashing, designed to minimize the data set size, thereby reducing the number of expensive quantum chemical calculations while preserving the data set's diversity and accuracy. Our approach achieves data set reductions of nearly an order of magnitude. To demonstrate the method's effectiveness, we applied it to develop ML potentials to study a prototypical chemical reaction in an explicit solvent and a first-order phase transition. Finally, well-tempered metadynamics simulations utilizing these ML potentials enabled us to calculate the converged free energy surfaces for both the chemical reaction and the phase transition.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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