{"title":"基于位置敏感哈希的深度潜能训练数据集约简。","authors":"Anmol, Anuj Kumar Sirohi, Neha, Jayadeva, Sandeep Kumar, Tarak Karmakar","doi":"10.1021/acs.jctc.5c00366","DOIUrl":null,"url":null,"abstract":"<p><p>Machine learning methods provide a great scope for developing ab initio quality potentials for diverse systems, ranging from simple fluids to complex solids. However, these methods typically require extensive data sets for effective model training, and the accuracy of the ML potential is highly dependent on data quality, necessitating expensive ab initio calculations. To address this challenge, we present a novel method based on locality-sensitive hashing, designed to minimize the data set size, thereby reducing the number of expensive quantum chemical calculations while preserving the data set's diversity and accuracy. Our approach achieves data set reductions of nearly an order of magnitude. To demonstrate the method's effectiveness, we applied it to develop ML potentials to study a prototypical chemical reaction in an explicit solvent and a first-order phase transition. Finally, well-tempered metadynamics simulations utilizing these ML potentials enabled us to calculate the converged free energy surfaces for both the chemical reaction and the phase transition.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"6113-6120"},"PeriodicalIF":5.7000,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Locality-Sensitive Hashing-Based Data Set Reduction for Deep Potential Training.\",\"authors\":\"Anmol, Anuj Kumar Sirohi, Neha, Jayadeva, Sandeep Kumar, Tarak Karmakar\",\"doi\":\"10.1021/acs.jctc.5c00366\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Machine learning methods provide a great scope for developing ab initio quality potentials for diverse systems, ranging from simple fluids to complex solids. However, these methods typically require extensive data sets for effective model training, and the accuracy of the ML potential is highly dependent on data quality, necessitating expensive ab initio calculations. To address this challenge, we present a novel method based on locality-sensitive hashing, designed to minimize the data set size, thereby reducing the number of expensive quantum chemical calculations while preserving the data set's diversity and accuracy. Our approach achieves data set reductions of nearly an order of magnitude. To demonstrate the method's effectiveness, we applied it to develop ML potentials to study a prototypical chemical reaction in an explicit solvent and a first-order phase transition. Finally, well-tempered metadynamics simulations utilizing these ML potentials enabled us to calculate the converged free energy surfaces for both the chemical reaction and the phase transition.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\" \",\"pages\":\"6113-6120\"},\"PeriodicalIF\":5.7000,\"publicationDate\":\"2025-06-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.5c00366\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/6/10 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00366","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/6/10 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Locality-Sensitive Hashing-Based Data Set Reduction for Deep Potential Training.
Machine learning methods provide a great scope for developing ab initio quality potentials for diverse systems, ranging from simple fluids to complex solids. However, these methods typically require extensive data sets for effective model training, and the accuracy of the ML potential is highly dependent on data quality, necessitating expensive ab initio calculations. To address this challenge, we present a novel method based on locality-sensitive hashing, designed to minimize the data set size, thereby reducing the number of expensive quantum chemical calculations while preserving the data set's diversity and accuracy. Our approach achieves data set reductions of nearly an order of magnitude. To demonstrate the method's effectiveness, we applied it to develop ML potentials to study a prototypical chemical reaction in an explicit solvent and a first-order phase transition. Finally, well-tempered metadynamics simulations utilizing these ML potentials enabled us to calculate the converged free energy surfaces for both the chemical reaction and the phase transition.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.