Xuebin Wang , Ruixue Qin , Ke Zhang , Zengru Di , Qiang Liu , He Liu
{"title":"基于重叠群落检测的秀丽隐杆线虫功能神经回路预测","authors":"Xuebin Wang , Ruixue Qin , Ke Zhang , Zengru Di , Qiang Liu , He Liu","doi":"10.1016/j.neunet.2025.107653","DOIUrl":null,"url":null,"abstract":"<div><div>The identification of functional neural circuits is crucial for understanding brain functions. However, experimental methods are often labor-intensive and resource-intensive. In this study, we modified the BIGCLAM algorithm to detect overlapping communities in directed and weighted networks and applied it to the neural networks of hermaphrodite and male Caenorhabditis elegans (C. elegans). Given the high similarity in connotation between network communities and functional neural circuits, we can predict functional neural circuits by detecting communities within the neural networks, thereby reducing the complexity of experimental research. In hermaphrodites, we predicted functional neural circuits related to various behaviors, including egg-laying, pharyngeal regulation, stress-induced sleep, tail sensation, and mechanosensation. In males, we identified functional neural circuits involved in sex-specific behaviors, such as mating and mate-searching, as well as those related to mechanosensation and food representation. These findings provide new insights into the neural mechanisms underlying behaviors and sexual dimorphism in C. elegans. The modified algorithm also has potential applications in analyzing other complex systems.</div></div>","PeriodicalId":49763,"journal":{"name":"Neural Networks","volume":"190 ","pages":"Article 107653"},"PeriodicalIF":6.3000,"publicationDate":"2025-06-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Prediction of functional neural circuits in caenorhabditis elegans based on overlapping community detection\",\"authors\":\"Xuebin Wang , Ruixue Qin , Ke Zhang , Zengru Di , Qiang Liu , He Liu\",\"doi\":\"10.1016/j.neunet.2025.107653\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The identification of functional neural circuits is crucial for understanding brain functions. However, experimental methods are often labor-intensive and resource-intensive. In this study, we modified the BIGCLAM algorithm to detect overlapping communities in directed and weighted networks and applied it to the neural networks of hermaphrodite and male Caenorhabditis elegans (C. elegans). Given the high similarity in connotation between network communities and functional neural circuits, we can predict functional neural circuits by detecting communities within the neural networks, thereby reducing the complexity of experimental research. In hermaphrodites, we predicted functional neural circuits related to various behaviors, including egg-laying, pharyngeal regulation, stress-induced sleep, tail sensation, and mechanosensation. In males, we identified functional neural circuits involved in sex-specific behaviors, such as mating and mate-searching, as well as those related to mechanosensation and food representation. These findings provide new insights into the neural mechanisms underlying behaviors and sexual dimorphism in C. elegans. The modified algorithm also has potential applications in analyzing other complex systems.</div></div>\",\"PeriodicalId\":49763,\"journal\":{\"name\":\"Neural Networks\",\"volume\":\"190 \",\"pages\":\"Article 107653\"},\"PeriodicalIF\":6.3000,\"publicationDate\":\"2025-06-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Neural Networks\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0893608025005337\",\"RegionNum\":1,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neural Networks","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0893608025005337","RegionNum":1,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
Prediction of functional neural circuits in caenorhabditis elegans based on overlapping community detection
The identification of functional neural circuits is crucial for understanding brain functions. However, experimental methods are often labor-intensive and resource-intensive. In this study, we modified the BIGCLAM algorithm to detect overlapping communities in directed and weighted networks and applied it to the neural networks of hermaphrodite and male Caenorhabditis elegans (C. elegans). Given the high similarity in connotation between network communities and functional neural circuits, we can predict functional neural circuits by detecting communities within the neural networks, thereby reducing the complexity of experimental research. In hermaphrodites, we predicted functional neural circuits related to various behaviors, including egg-laying, pharyngeal regulation, stress-induced sleep, tail sensation, and mechanosensation. In males, we identified functional neural circuits involved in sex-specific behaviors, such as mating and mate-searching, as well as those related to mechanosensation and food representation. These findings provide new insights into the neural mechanisms underlying behaviors and sexual dimorphism in C. elegans. The modified algorithm also has potential applications in analyzing other complex systems.
期刊介绍:
Neural Networks is a platform that aims to foster an international community of scholars and practitioners interested in neural networks, deep learning, and other approaches to artificial intelligence and machine learning. Our journal invites submissions covering various aspects of neural networks research, from computational neuroscience and cognitive modeling to mathematical analyses and engineering applications. By providing a forum for interdisciplinary discussions between biology and technology, we aim to encourage the development of biologically-inspired artificial intelligence.