基于重叠群落检测的秀丽隐杆线虫功能神经回路预测

IF 6.3 1区 计算机科学 Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE
Xuebin Wang , Ruixue Qin , Ke Zhang , Zengru Di , Qiang Liu , He Liu
{"title":"基于重叠群落检测的秀丽隐杆线虫功能神经回路预测","authors":"Xuebin Wang ,&nbsp;Ruixue Qin ,&nbsp;Ke Zhang ,&nbsp;Zengru Di ,&nbsp;Qiang Liu ,&nbsp;He Liu","doi":"10.1016/j.neunet.2025.107653","DOIUrl":null,"url":null,"abstract":"<div><div>The identification of functional neural circuits is crucial for understanding brain functions. However, experimental methods are often labor-intensive and resource-intensive. In this study, we modified the BIGCLAM algorithm to detect overlapping communities in directed and weighted networks and applied it to the neural networks of hermaphrodite and male Caenorhabditis elegans (C. elegans). Given the high similarity in connotation between network communities and functional neural circuits, we can predict functional neural circuits by detecting communities within the neural networks, thereby reducing the complexity of experimental research. In hermaphrodites, we predicted functional neural circuits related to various behaviors, including egg-laying, pharyngeal regulation, stress-induced sleep, tail sensation, and mechanosensation. In males, we identified functional neural circuits involved in sex-specific behaviors, such as mating and mate-searching, as well as those related to mechanosensation and food representation. These findings provide new insights into the neural mechanisms underlying behaviors and sexual dimorphism in C. elegans. The modified algorithm also has potential applications in analyzing other complex systems.</div></div>","PeriodicalId":49763,"journal":{"name":"Neural Networks","volume":"190 ","pages":"Article 107653"},"PeriodicalIF":6.3000,"publicationDate":"2025-06-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Prediction of functional neural circuits in caenorhabditis elegans based on overlapping community detection\",\"authors\":\"Xuebin Wang ,&nbsp;Ruixue Qin ,&nbsp;Ke Zhang ,&nbsp;Zengru Di ,&nbsp;Qiang Liu ,&nbsp;He Liu\",\"doi\":\"10.1016/j.neunet.2025.107653\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The identification of functional neural circuits is crucial for understanding brain functions. However, experimental methods are often labor-intensive and resource-intensive. In this study, we modified the BIGCLAM algorithm to detect overlapping communities in directed and weighted networks and applied it to the neural networks of hermaphrodite and male Caenorhabditis elegans (C. elegans). Given the high similarity in connotation between network communities and functional neural circuits, we can predict functional neural circuits by detecting communities within the neural networks, thereby reducing the complexity of experimental research. In hermaphrodites, we predicted functional neural circuits related to various behaviors, including egg-laying, pharyngeal regulation, stress-induced sleep, tail sensation, and mechanosensation. In males, we identified functional neural circuits involved in sex-specific behaviors, such as mating and mate-searching, as well as those related to mechanosensation and food representation. These findings provide new insights into the neural mechanisms underlying behaviors and sexual dimorphism in C. elegans. The modified algorithm also has potential applications in analyzing other complex systems.</div></div>\",\"PeriodicalId\":49763,\"journal\":{\"name\":\"Neural Networks\",\"volume\":\"190 \",\"pages\":\"Article 107653\"},\"PeriodicalIF\":6.3000,\"publicationDate\":\"2025-06-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Neural Networks\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0893608025005337\",\"RegionNum\":1,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neural Networks","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0893608025005337","RegionNum":1,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0

摘要

功能性神经回路的识别对于理解大脑功能至关重要。然而,实验方法往往是劳动密集型和资源密集型的。在这项研究中,我们改进了BIGCLAM算法来检测有向和加权网络中的重叠群落,并将其应用于雌雄同体秀丽隐杆线虫(C. elegans)的神经网络。鉴于网络社区与功能神经回路在内涵上的高度相似性,我们可以通过检测神经网络内的社区来预测功能神经回路,从而降低实验研究的复杂性。在雌雄同体中,我们预测了与各种行为相关的功能性神经回路,包括产卵、咽调节、应激诱导睡眠、尾部感觉和机械感觉。在雄性中,我们发现了涉及性别特定行为的功能性神经回路,如交配和寻找配偶,以及与机械感觉和食物表征相关的神经回路。这些发现为秀丽隐杆线虫行为和两性二态性的神经机制提供了新的见解。改进后的算法在分析其他复杂系统方面也有潜在的应用前景。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Prediction of functional neural circuits in caenorhabditis elegans based on overlapping community detection
The identification of functional neural circuits is crucial for understanding brain functions. However, experimental methods are often labor-intensive and resource-intensive. In this study, we modified the BIGCLAM algorithm to detect overlapping communities in directed and weighted networks and applied it to the neural networks of hermaphrodite and male Caenorhabditis elegans (C. elegans). Given the high similarity in connotation between network communities and functional neural circuits, we can predict functional neural circuits by detecting communities within the neural networks, thereby reducing the complexity of experimental research. In hermaphrodites, we predicted functional neural circuits related to various behaviors, including egg-laying, pharyngeal regulation, stress-induced sleep, tail sensation, and mechanosensation. In males, we identified functional neural circuits involved in sex-specific behaviors, such as mating and mate-searching, as well as those related to mechanosensation and food representation. These findings provide new insights into the neural mechanisms underlying behaviors and sexual dimorphism in C. elegans. The modified algorithm also has potential applications in analyzing other complex systems.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Neural Networks
Neural Networks 工程技术-计算机:人工智能
CiteScore
13.90
自引率
7.70%
发文量
425
审稿时长
67 days
期刊介绍: Neural Networks is a platform that aims to foster an international community of scholars and practitioners interested in neural networks, deep learning, and other approaches to artificial intelligence and machine learning. Our journal invites submissions covering various aspects of neural networks research, from computational neuroscience and cognitive modeling to mathematical analyses and engineering applications. By providing a forum for interdisciplinary discussions between biology and technology, we aim to encourage the development of biologically-inspired artificial intelligence.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信